Lacimicrobium alkaliphilum str. KCTC 32984

curved/spiralfacultative aerobe/anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Alteromonadaceae

Genus

Lacimicrobium

Description

Lacimicrobium alkaliphilum str. KCTC 32984 is a Gram-negative bacterium characterized by its curved or spiral shape. This organism exhibits motility, allowing it to navigate its environment. It is classified as a facultative aerobe/anaerobe, indicating its capability to grow in both the presence and absence of oxygen, which provides it with metabolic versatility. Optimal growth conditions for Lacimicrobium alkaliphilum occur at a temperature of 29°C, placing it within the mesophilic range. This temperature preference suggests that it thrives in moderate environments, which may be typical of natural habitats where it is found. The strain has a single replicon, which is indicative of its genomic organization. The genomic sequence is accessible under the accession NZ_CP013650.1, providing a resource for further genetic and biochemical studies. The ecological implications of Lacimicrobium alkaliphilum str. KCTC 32984 may be significant, particularly in alkaline environments where its metabolic capabilities could influence nutrient cycling and microbial community dynamics. Its ability to thrive under varying oxygen conditions could enable it to occupy ecological niches that are less hospitable to strictly aerobic or anaerobic organisms, potentially contributing to the stability and resilience of these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyAlteromonadaceae
GenusLacimicrobium
SpeciesLacimicrobium alkaliphilum
StrainKCTC 32984

Profile

Physiology
Gram staining propertiesGram-negative
Shapecurved/spiral
Mobilitymotile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative aerobe/anaerobe
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lacimicrobium alkaliphilum strain YelD216 chromosome, complete

Gene Summary

Adenine Count

1082721 bp

Thymine Count

1079409 bp

Guanine Count

1109757 bp

Cytosine Count

1106948 bp

Genome Length

4378835 bp

Protein-coding Genes

3864 genes

Non-Coding Genes

71 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent helicase hrpbAT746_RS02805P37024Positive582353 - 58482190731.7
penicillin-binding protein 1bAT746_RS02810Q9KUC0Positive584821 - 58722389393.2
pectinesterase family proteinAT746_RS02815P0C1A8Positive587390 - 58853841907.3
duf4861 family proteinAT746_RS02820Not AvailableNegative588542 - 58976244973.8
glycoside hydrolase family 28 proteinAT746_RS02825Not AvailableNegative589794 - 59119452229.1
tonb-dependent receptorAT746_RS02830Not AvailableNegative591290 - 59399599678.0
2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdudAT746_RS02835P50842Positive594325 - 59508626523.7
5-dehydro-4-deoxy-d-glucuronate isomeraseAT746_RS02840T2KN98Positive595145 - 59598431673.4
trap transporter substrate-binding proteinAT746_RS02845P43020Positive596001 - 59697236158.3
trap transporter small permeaseAT746_RS02850Not AvailablePositive596981 - 59747818342.0

Displaying genes 561 – 570 of 3935 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

243 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 243 metabolites

Health Effects

No health effects information available for this bacterium.