Rhodopseudomonas sp. AAP120

anaerobic / aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Rhodopseudomonas

Description

Rhodopseudomonas sp. AAP120 is a Gram-negative bacterium notable for its versatility in oxygen requirements, being capable of both anaerobic and aerobic growth. This adaptability allows it to thrive in diverse environments, making it an interesting subject for study in microbial ecology. The presence of flagella suggests that Rhodopseudomonas sp. AAP120 possesses motility, which can play a vital role in its ability to navigate through different habitats and access nutrients. The bacterium contains a single replicon, indicating a streamlined genetic structure that may contribute to its efficient replication and adaptability. The strain is cataloged under the accession number LJIC00000000.1, which provides a reference for researchers seeking to explore its genetic and phenotypic characteristics further. In summary, Rhodopseudomonas sp. AAP120's dual oxygen requirement, motility due to flagella, and simple genomic configuration highlight its ecological versatility. These traits suggest that it may play a significant role in nutrient cycling and microbial interactions in various environments, potentially influencing soil and water ecosystems where it is found.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas sp. AAP120
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic / aerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodopseudomonas sp. AAP120 AAP120_Contigs_228, whole genome

Gene Summary

Adenine Count

1058929 bp

Thymine Count

1056988 bp

Guanine Count

2021049 bp

Cytosine Count

2024060 bp

Genome Length

6161026 bp

Protein-coding Genes

5357 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rnd transporterIP86_00405Not AvailablePositive84608 - 87802113929.0
rnd transporter mfp subunitIP86_00410Not AvailablePositive87792 - 8898842078.4
3,4-dihydroxy-2-butanone 4-phosphate synthaseIP86_00415Not AvailablePositive89306 - 9038538663.0
acyl-coa dehydrogenaseIP86_00420Q2KHZ9Positive90449 - 9166344474.5
mbl fold metallo-hydrolaseIP86_00425M1WCF7Positive91856 - 9278833538.5
secondary thiamine-phosphate synthase enzymeIP86_00430P74125Negative93199 - 9367216723.0
hypothetical proteinIP86_00435Not AvailableNegative93770 - 9436021373.3
disulfide bond formation protein dsbaIP86_00440Not AvailableNegative94404 - 9502723202.6
atp synthase f0 subunit a'IP86_00445P15011Positive95326 - 9570913292.7
atp synthase f0f1 subunit aIP86_00450Q6NBI2Positive95779 - 9652526967.1

Displaying genes 121 – 130 of 5431 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

377 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 377 metabolites

Health Effects

No health effects information available for this bacterium.