Porphyrobacter sp. AAP60

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Erythrobacteraceae

Genus

Porphyrobacter

Description

Porphyrobacter sp. AAP60 is a microbial species characterized by having a single replicon, which may indicate a streamlined genomic structure. Its genomic data is cataloged under the accession number LJHV00000000.1, providing a reference for further research and analysis. This bacterium belongs to the genus Porphyrobacter, known for its phototrophic capabilities, which allows it to utilize light as an energy source in certain environmental conditions. This trait can be significant for ecological studies, particularly in understanding its role in various ecosystems, such as aquatic environments where light penetration influences microbial community structures. The presence of a single replicon may also suggest a potential for efficient replication and adaptation to its habitat. This trait, alongside its phototrophic nature, could enable Porphyrobacter sp. AAP60 to thrive in niche environments where light is available, potentially contributing to nutrient cycling and energy flow within those ecosystems. As such, the study of this organism could provide insights into the dynamics of microbial communities and their responses to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyErythrobacteraceae
GenusPorphyrobacter
SpeciesPorphyrobacter sp. AAP60
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Porphyrobacter sp. AAP60 AAP60_Contigs_30, whole genome shotgun

Gene Summary

Adenine Count

608753 bp

Thymine Count

603988 bp

Guanine Count

1019254 bp

Cytosine Count

1021742 bp

Genome Length

3253737 bp

Protein-coding Genes

2867 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-hydroxy-2-methylbutyryl-coa dehydrogenaseIP79_13970O18404Negative2987278 - 298806326987.5
acetyl-coa acetyltransferaseIP79_13975I6XHJ3Negative2988187 - 298935640680.1
hypothetical proteinIP79_13980Not AvailablePositive2989547 - 299027826829.7
hypothetical proteinIP79_13985Not AvailablePositive2990275 - 299200861369.6
hypothetical proteinIP79_13990Not AvailablePositive2992005 - 299289831103.8
hypothetical proteinIP79_13995Q6CZB5Negative2993017 - 2995992104380.0
hypothetical proteinIP79_14000Not AvailablePositive2996295 - 299682819159.9
peptidase s9IP79_14005Q12884Negative2996905 - 299889373659.0
tonb-dependent receptorIP79_14010Not AvailableNegative2999038 - 3002463123051.0
clp protease clpbIP79_14015Q6N1H2Negative3002828 - 300540493893.7

Displaying genes 2701 – 2710 of 2921 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

254 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000122echinenoneC40H54OChemical structure of echinenoneNot available
Average550.871Da
Monoisotopic550.417466359Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 254 metabolites

Health Effects

No health effects information available for this bacterium.