Rhizobium sp. AAP43

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium sp. AAP43 is characterized by its rod-shaped morphology and the presence of flagella, which suggests motility. This bacterium belongs to the genus Rhizobium, known for its ability to form symbiotic relationships with leguminous plants, facilitating nitrogen fixation in root nodules. The single replicon indicates a streamlined genetic structure, which may play a role in its adaptability and efficiency in symbiosis. The accession number LJHS00000000.1 provides a reference for genetic studies and further research into the specific traits of Rhizobium sp. AAP43. Understanding the genetic composition and functional characteristics of this strain can shed light on its ecological role within agricultural systems. The ecological insight supported by these traits is the potential of Rhizobium sp. AAP43 to enhance soil fertility through nitrogen fixation, contributing to sustainable agricultural practices. By promoting plant growth and reducing the need for chemical fertilizers, this bacterium plays a significant role in maintaining soil health and supporting biodiversity within its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. AAP43
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium sp. AAP43
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium sp. AAP43 AAP43_Contigs_69, whole genome shotgun

Gene Summary

Adenine Count

968601 bp

Thymine Count

964132 bp

Guanine Count

1469062 bp

Cytosine Count

1473604 bp

Genome Length

4875399 bp

Protein-coding Genes

4348 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion proteinIP76_06685Not AvailablePositive1396478 - 139750337752.1
type vi secretion proteinIP76_06695Q9I753Positive1398638 - 139997849697.9
cell envelope biogenesis protein ompaIP76_06700Not AvailablePositive1399975 - 140150755575.3
type vi secretion protein icmfIP76_06705Q9I755Positive1401504 - 1404971127362.0
hypothetical proteinIP76_06710Not AvailablePositive1404977 - 140649454564.1
capsule biosynthesis proteinIP76_06720Not AvailableNegative1407525 - 140866439598.3
nucleoside-diphosphate sugar epimeraseIP76_06725Not AvailableNegative1408829 - 140972832250.2
histidine kinaseIP76_06730P55552Negative1410128 - 141110536721.5
2-dehydro-3-deoxygluconokinaseIP76_06735P37647Negative1411762 - 141268232850.9
gntr family transcriptional regulatorIP76_06740P32425Negative1412713 - 141347727859.9

Displaying genes 1311 – 1320 of 4423 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

284 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 284 metabolites

Health Effects

No health effects information available for this bacterium.