Sphingomonas sp. AAP5

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. AAP5 is a rod-shaped bacterium characterized by the presence of flagella, which facilitate its motility. This organism possesses a notably complex genomic structure, containing four replicons, indicative of a significant level of genomic organization and potential adaptability in various environments. The genomic data for Sphingomonas sp. AAP5 is cataloged under multiple accessions: NZ_CP037915.1, NZ_CP037913.1, NZ_CP037914.1, and NZ_CP037916.1, reflecting its sequenced genomic information available in scientific databases. The presence of flagella suggests that Sphingomonas sp. AAP5 is capable of active movement, which can be advantageous in diverse ecological niches, allowing the bacterium to navigate toward nutrients or away from harmful substances. The rod shape of this organism is typical for many members of the Sphingomonadaceae family, which are often associated with various environmental settings, including soil and water. In a broader ecological context, the ability of Sphingomonas sp. AAP5 to move and adapt may play a crucial role in its survival and interaction with other microorganisms, influencing microbial communities and nutrient cycling in its habitat. Understanding the traits of this bacterium can provide insights into its ecological role, particularly in environments where it may contribute to biogeochemical processes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. AAP5
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. AAP5
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. AAP5 chromosome, complete genome.

Gene Summary

Adenine Count

676348 bp

Thymine Count

672917 bp

Guanine Count

1319676 bp

Cytosine Count

1318426 bp

Genome Length

3987367 bp

Protein-coding Genes

3675 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate dehydrogenase family proteinE2E30_RS15440Not AvailableNegative3342410 - 334322228324.3
maf family proteinE2E30_RS15445Not AvailableNegative3343219 - 334381521099.7
pyruvate, water dikinase regulatory proteinE2E30_RS15450Not AvailableNegative3343812 - 334463930378.4
uroporphyrinogen decarboxylaseE2E30_RS15455Not AvailablePositive3344955 - 334598636653.1
copd family proteinE2E30_RS15460Not AvailablePositive3345983 - 334643816595.1
transcription termination factor rhoE2E30_RS15465Not AvailablePositive3346683 - 334793946497.2
methylated-dna--[protein]-cysteine s-methyltransferaseE2E30_RS15470Not AvailableNegative3348057 - 334853616506.9
duf6489 family proteinE2E30_RS15475Not AvailablePositive3348586 - 33488108368.2
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeE2E30_RS15480Not AvailablePositive3348814 - 335010044563.1
trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmgE2E30_RS15485Not AvailablePositive3350162 - 335200665468.7

Displaying genes 3131 – 3140 of 4155 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.