Novosphingobium sp. AAP1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium sp. AAP1 is a notable bacterium characterized by the presence of flagella, which indicates its motility. This trait likely contributes to its ability to navigate various environments, enhancing its ecological adaptability. The organism has a single replicon, which suggests a streamlined genetic structure that may facilitate efficient replication and maintenance of its genomic integrity. The genome of Novosphingobium sp. AAP1 is accessible under the accession number LJHO00000000.1, providing a basis for further genetic and functional studies. This genomic information can be crucial for understanding the metabolic pathways and potential applications of this bacterium in bioremediation or biotechnological processes. In summary, Novosphingobium sp. AAP1's flagellated structure and single replicon could play significant roles in its ecological interactions and survival strategies. These traits may also position the bacterium as a candidate for further research in environmental microbiology, particularly in contexts where motility and genetic simplicity confer advantages in diverse habitats.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium sp. AAP1
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium sp. AAP1 AAP1Contigs50, whole genome shotgun

Gene Summary

Adenine Count

818423 bp

Thymine Count

816716 bp

Guanine Count

1554448 bp

Cytosine Count

1560992 bp

Genome Length

4750579 bp

Protein-coding Genes

3898 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid transporterIP65_19100P39276Negative4379244 - 438063550032.8
hypothetical proteinIP65_19105Not AvailablePositive4380710 - 43809107429.82
metal abc transporter permeaseIP65_19110Q2G506Negative4381062 - 438287966552.3
hypothetical proteinIP65_19115Not AvailableNegative4382932 - 438387333110.0
hypothetical proteinIP65_19120Not AvailableNegative4384035 - 438550452198.0
hypothetical proteinIP65_19125P71054Negative4385564 - 438658036338.7
extensinIP65_19135Not AvailableNegative4388552 - 438924724845.0
phosphoserine aminotransferaseIP65_19140P52878Positive4389457 - 439059340620.6
3-phosphoglycerate dehydrogenaseIP65_19145P73821Positive4390793 - 439237655815.6
hypothetical proteinIP65_19150P25637Positive4392473 - 439282012610.2

Displaying genes 3661 – 3670 of 3956 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

347 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da

Displaying 1–10 of 347 metabolites

Health Effects

No health effects information available for this bacterium.