Sphingopyxis fribergensis str. Kp5.2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis fribergensis strain Kp5.2 is a rod-shaped bacterium characterized by the presence of two replicons. This feature is significant as it may confer advantages in genetic stability and adaptability, allowing for diverse metabolic capabilities. The strain is cataloged in public databases under the accessions NZ_CP009123.1 and NZ_CP009122.1, which provide molecular and genomic information essential for further research and characterization. The rod shape of Sphingopyxis fribergensis str. Kp5.2 suggests a potential for efficient nutrient uptake and motility, traits that are often advantageous in various ecological niches. Members of the Sphingopyxis genus are typically known for their ability to degrade complex organic compounds, which positions them as important players in bioremediation and nutrient cycling in their environments. The presence of two replicons may also indicate a role in horizontal gene transfer, enhancing the strain's ability to adapt to changing environmental conditions. This adaptability is crucial in ecosystems where such bacteria can contribute to the degradation of pollutants or organic matter, promoting ecosystem health and functionality. Overall, Sphingopyxis fribergensis str. Kp5.2 exemplifies the diverse ecological roles that bacteria can play, particularly in the context of environmental microbiology and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis fribergensis
StrainKp5.2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKuwaiti soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis fribergensis strain Kp5.2 chromosome, complete

Gene Summary

Adenine Count

903198 bp

Thymine Count

901834 bp

Guanine Count

1585793 bp

Cytosine Count

1602759 bp

Genome Length

4993584 bp

Protein-coding Genes

4685 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tn3 family transposaseSKP52_RS23455Not AvailablePositive9653 - 12622109700.0
radical sam/spasm domain-containing proteinSKP52_RS23460Not AvailablePositive12683 - 1335124460.7
neutral/alkaline non-lysosomal ceramidase n-terminal domain-containing proteinSKP52_RS23465Not AvailablePositive13417 - 1460142895.2
hypothetical proteinSKP52_RS23470Not AvailablePositive14598 - 1555435020.1
lytic transglycosylase domain-containing proteinSKP52_RS27400Not AvailableNegative15509 - 1639332442.3
hypothetical proteinSKP52_RS26335Not AvailableNegative16390 - 1681515529.5
hypothetical proteinSKP52_RS27155Not AvailableNegative17339 - 175939778.32
trbc/virb2 family proteinSKP52_RS23480Not AvailablePositive17601 - 1792710837.5
type iv conjugative transfer system protein tralSKP52_RS23485Not AvailablePositive17987 - 1827110639.4
type iv conjugative transfer system protein traeSKP52_RS23490Not AvailablePositive18275 - 1887422018.7

Displaying genes 4791 – 4800 of 4971 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.