Sphingopyxis fribergensis str. Kp5.2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis fribergensis strain Kp5.2 is a rod-shaped bacterium characterized by the presence of two replicons. This feature is significant as it may confer advantages in genetic stability and adaptability, allowing for diverse metabolic capabilities. The strain is cataloged in public databases under the accessions NZ_CP009123.1 and NZ_CP009122.1, which provide molecular and genomic information essential for further research and characterization. The rod shape of Sphingopyxis fribergensis str. Kp5.2 suggests a potential for efficient nutrient uptake and motility, traits that are often advantageous in various ecological niches. Members of the Sphingopyxis genus are typically known for their ability to degrade complex organic compounds, which positions them as important players in bioremediation and nutrient cycling in their environments. The presence of two replicons may also indicate a role in horizontal gene transfer, enhancing the strain's ability to adapt to changing environmental conditions. This adaptability is crucial in ecosystems where such bacteria can contribute to the degradation of pollutants or organic matter, promoting ecosystem health and functionality. Overall, Sphingopyxis fribergensis str. Kp5.2 exemplifies the diverse ecological roles that bacteria can play, particularly in the context of environmental microbiology and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis fribergensis
StrainKp5.2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKuwaiti soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis fribergensis strain Kp5.2 chromosome, complete

Gene Summary

Adenine Count

903198 bp

Thymine Count

901834 bp

Guanine Count

1585793 bp

Cytosine Count

1602759 bp

Genome Length

4993584 bp

Protein-coding Genes

4685 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
formyltetrahydrofolate deformylaseSKP52_RS16215Not AvailableNegative3493078 - 349397132646.9
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenaseSKP52_RS16220Not AvailableNegative3494089 - 349520139400.5
l-serine ammonia-lyaseSKP52_RS16225Not AvailableNegative3495727 - 349710648377.9
superoxide dismutaseSKP52_RS16230Not AvailableNegative3497276 - 349789022557.3
cisplatin damage response atp-dependent dna ligaseSKP52_RS16235Not AvailableNegative3498076 - 349964457949.0
ligase-associated dna damage response exonucleaseSKP52_RS16240Not AvailableNegative3499641 - 350065437388.6
udgx family uracil-dna binding proteinSKP52_RS16245Not AvailableNegative3500654 - 350206952935.2
putative dna modification/repair radical sam proteinSKP52_RS16250Not AvailableNegative3502078 - 350332845763.5
sensor histidine kinaseSKP52_RS16255Not AvailableNegative3503403 - 350492056513.8
response regulatorSKP52_RS16260Not AvailablePositive3505129 - 350592328623.9

Displaying genes 3321 – 3330 of 4971 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.