Sphingopyxis fribergensis str. Kp5.2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis fribergensis strain Kp5.2 is a rod-shaped bacterium characterized by the presence of two replicons. This feature is significant as it may confer advantages in genetic stability and adaptability, allowing for diverse metabolic capabilities. The strain is cataloged in public databases under the accessions NZ_CP009123.1 and NZ_CP009122.1, which provide molecular and genomic information essential for further research and characterization. The rod shape of Sphingopyxis fribergensis str. Kp5.2 suggests a potential for efficient nutrient uptake and motility, traits that are often advantageous in various ecological niches. Members of the Sphingopyxis genus are typically known for their ability to degrade complex organic compounds, which positions them as important players in bioremediation and nutrient cycling in their environments. The presence of two replicons may also indicate a role in horizontal gene transfer, enhancing the strain's ability to adapt to changing environmental conditions. This adaptability is crucial in ecosystems where such bacteria can contribute to the degradation of pollutants or organic matter, promoting ecosystem health and functionality. Overall, Sphingopyxis fribergensis str. Kp5.2 exemplifies the diverse ecological roles that bacteria can play, particularly in the context of environmental microbiology and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis fribergensis
StrainKp5.2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKuwaiti soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis fribergensis strain Kp5.2 chromosome, complete

Gene Summary

Adenine Count

903198 bp

Thymine Count

901834 bp

Guanine Count

1585793 bp

Cytosine Count

1602759 bp

Genome Length

4993584 bp

Protein-coding Genes

4685 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv secretion system proteinSKP52_RS09920Not AvailablePositive2132879 - 213409641684.0
virb8 family proteinSKP52_RS09925Not AvailablePositive2134093 - 213487228179.4
trbg/virb9 family p-type conjugative transfer proteinSKP52_RS09930Not AvailablePositive2134869 - 213557025136.2
trbi/virb10 family proteinSKP52_RS09935Not AvailablePositive2135663 - 213666734059.9
p-type dna transfer atpase virb11SKP52_RS09940Not AvailablePositive2136664 - 213765334832.9
hypothetical proteinSKP52_RS09945Not AvailablePositive2137948 - 21381457011.27
is3 family transposaseSKP52_RS09955Not AvailablePositive2138509 - 213986052401.5
rhs repeat domain-containing proteinSKP52_RS09960Not AvailablePositive2140039 - 2143101107642.0
hepn domain-containing proteinSKP52_RS09965Not AvailableNegative2143725 - 214429121930.2
hypothetical proteinSKP52_RS27210Not AvailableNegative2144273 - 21444044911.76

Displaying genes 2031 – 2040 of 4971 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.