Sphingopyxis fribergensis str. Kp5.2

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis fribergensis strain Kp5.2 is a rod-shaped bacterium characterized by the presence of two replicons. This feature is significant as it may confer advantages in genetic stability and adaptability, allowing for diverse metabolic capabilities. The strain is cataloged in public databases under the accessions NZ_CP009123.1 and NZ_CP009122.1, which provide molecular and genomic information essential for further research and characterization. The rod shape of Sphingopyxis fribergensis str. Kp5.2 suggests a potential for efficient nutrient uptake and motility, traits that are often advantageous in various ecological niches. Members of the Sphingopyxis genus are typically known for their ability to degrade complex organic compounds, which positions them as important players in bioremediation and nutrient cycling in their environments. The presence of two replicons may also indicate a role in horizontal gene transfer, enhancing the strain's ability to adapt to changing environmental conditions. This adaptability is crucial in ecosystems where such bacteria can contribute to the degradation of pollutants or organic matter, promoting ecosystem health and functionality. Overall, Sphingopyxis fribergensis str. Kp5.2 exemplifies the diverse ecological roles that bacteria can play, particularly in the context of environmental microbiology and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis fribergensis
StrainKp5.2

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKuwaiti soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis fribergensis strain Kp5.2 chromosome, complete

Gene Summary

Adenine Count

903198 bp

Thymine Count

901834 bp

Guanine Count

1585793 bp

Cytosine Count

1602759 bp

Genome Length

4993584 bp

Protein-coding Genes

4685 genes

Non-Coding Genes

96 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glutathione synthaseSKP52_RS05365Not AvailableNegative1139194 - 114014434717.7
yran family proteinSKP52_RS05370Not AvailableNegative1140155 - 114050513588.7
16s rrna (cytidine(1402)-2'-o)-methyltransferaseSKP52_RS05375Not AvailableNegative1140502 - 114136229965.9
penicillin-binding protein activatorSKP52_RS05380Not AvailablePositive1141424 - 114256039020.8
translation initiation factor if-3SKP52_RS05385Not AvailablePositive1142737 - 114327320238.7
nrde family proteinSKP52_RS05390Not AvailableNegative1143284 - 114398224631.3
duf4287 domain-containing proteinSKP52_RS05395Not AvailablePositive1144081 - 114463519831.5
tetr/acrr family transcriptional regulatorSKP52_RS05400Not AvailablePositive1144640 - 114524822397.8
hypothetical proteinSKP52_RS05405Not AvailablePositive1145272 - 114571516122.1
s10 family peptidaseSKP52_RS05410Not AvailableNegative1146015 - 114752054508.1

Displaying genes 1101 – 1110 of 4971 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.