Pseudomonas chlororaphis subsp. piscium

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis subsp. piscium is a Gram-negative bacterium characterized by its rod-shaped morphology. This subspecies is part of the broader Pseudomonas genus, known for a diverse range of ecological roles and metabolic capabilities. The organism has a single replicon, which is indicative of its genetic structure and can influence its replication and adaptability in various environments. The genetic information for Pseudomonas chlororaphis subsp. piscium is documented under the accession number NZ_CP027708.1, providing a resource for further studies into its genetics and potential applications. This subspecies is known for its ecological significance, particularly in relation to plant interactions. Members of the Pseudomonas genus, including Pseudomonas chlororaphis subsp. piscium, are often involved in the rhizosphere, where they can promote plant growth and suppress plant pathogens. This capability is attributed to their production of various secondary metabolites and compounds that can enhance plant health. In summary, Pseudomonas chlororaphis subsp. piscium exhibits key traits such as its Gram-negative status, rod shape, and unique genetic characteristics. Its role in promoting plant health and interacting within the rhizosphere underscores its significance in agricultural and ecological contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
Strainsubsp. piscium

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis subsp. piscium
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas chlororaphis subsp. piscium strain ATCC 17411

Gene Summary

Adenine Count

1356663 bp

Thymine Count

1351398 bp

Guanine Count

2244520 bp

Cytosine Count

2259816 bp

Genome Length

7212397 bp

Protein-coding Genes

6321 genes

Non-Coding Genes

209 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidinol-phosphate transaminaseC4K37_RS22850Not AvailableNegative5130385 - 513149739612.5
prephenate dehydrataseC4K37_RS22855Not AvailableNegative5131508 - 513260240389.6
3-phosphoserine/phosphohydroxythreonine transaminaseC4K37_RS22860Not AvailableNegative5132602 - 513368739801.3
dna gyrase subunit aC4K37_RS22865Not AvailableNegative5133752 - 513642198295.9
s-methyl-5-thioribose-1-phosphate isomeraseC4K37_RS22870Not AvailableNegative5136776 - 513785238846.8
trz/atz family hydrolaseC4K37_RS22875Not AvailablePositive5137961 - 513929248037.8
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigC4K37_RS22880Not AvailablePositive5139357 - 514005526026.4
n-acetylmuramic acid 6-phosphate phosphatase muppC4K37_RS22885Not AvailablePositive5140060 - 514073124620.8
ycik family oxidoreductaseC4K37_RS22890Not AvailablePositive5140770 - 514151026270.4
ggdef domain-containing proteinC4K37_RS22895Not AvailablePositive5141879 - 514280534612.6

Displaying genes 4571 – 4580 of 6530 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.