Permianibacter aggregans str. DSM 103792

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Permianibacter

Description

Permianibacter aggregans str. DSM 103792 is a notable bacterium characterized by a single replicon, indicating its genomic structure is relatively straightforward. This organism is cataloged under the accession number SNYM00000000.1, which serves as a unique identifier for its genomic sequence in databases. The designation "Permianibacter" suggests that this bacterium may be associated with environments influenced by Permian geological conditions, although specific ecological or habitat details are not provided. As a member of the microbial community, Permianibacter aggregans could play a role in nutrient cycling or other ecological processes, particularly in environments that reflect its evolutionary history. The simplicity of having a single replicon may allow for efficient replication and a streamlined cellular function, which could be advantageous in its native habitat. Understanding the traits and characteristics of Permianibacter aggregans str. DSM 103792 contributes to a broader comprehension of microbial diversity and ecological interactions, particularly in environments that have been shaped by historical geological events like the Permian period. Further research could elucidate its specific ecological roles and potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPermianibacter
SpeciesPermianibacter aggregans
StrainDSM 103792

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Permianibacter aggregans strain DSM 103792 Ga0310476_147, whole

Gene Summary

Adenine Count

955030 bp

Thymine Count

956573 bp

Guanine Count

1141220 bp

Cytosine Count

1142874 bp

Genome Length

4196277 bp

Protein-coding Genes

3737 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipopolysaccharide biosynthesis regulator ycimEV696_10169Not AvailablePositive66058 - 6721843453.2
orotidine-5'-phosphate decarboxylaseEV696_10170Not AvailablePositive67443 - 6819526907.0
udp-n-acetylglucosamine 2-epimeraseEV696_10171Not AvailablePositive68241 - 6935340803.6
mtn3 and saliva related transmembrane proteinEV696_10172Not AvailableNegative69608 - 698599176.5
competence protein comeaEV696_10173Not AvailablePositive70227 - 7054110890.5
mannose-1-phosphate guanylyltransferase (gdp) /mannose-6-phosphate isomerase type 2EV696_10174Not AvailablePositive70682 - 7212152786.3
udp-n-acetylglucosamine 2-epimerase (non-hydrolysing)EV696_10175Not AvailablePositive72223 - 7330840287.5
dtdp-glucose 4,6-dehydrataseEV696_10176Not AvailablePositive73353 - 7440839538.4
dtdp-4-dehydrorhamnose reductaseEV696_10177Not AvailablePositive74405 - 7530732902.4
glucose-1-phosphate thymidylyltransferaseEV696_10178Not AvailablePositive75304 - 7618833186.8

Displaying genes 71 – 80 of 3786 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.