Burkholderia stagnalis

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia stagnalis is a bacterial species characterized by a single replicon, which is significant for its genomic structure and stability. The complete genomic sequence of this organism is available under the accession number LPHB00000000.1. This genomic information is crucial for understanding the genetic makeup and potential functional capabilities of B. stagnalis. As a member of the Burkholderia genus, B. stagnalis is likely to exhibit traits commonly associated with this group, such as environmental adaptability and potential plant-associated interactions. Burkholderia species are known for their diverse ecological roles, which can include plant growth promotion and biocontrol of pathogens, as well as some strains being opportunistic pathogens in humans. The presence of a single replicon suggests a streamlined genomic organization, which may confer advantages in specific ecological niches by allowing for faster replication and adaptability to changing environments. The genomic data available could provide insights into its metabolic pathways and interactions within its ecosystem. In summary, understanding the genomic characteristics of Burkholderia stagnalis, particularly its single replicon and the referenced genomic sequence, can enhance our knowledge of its biological functions and ecological roles. This knowledge may further inform research on its applications in agriculture and environmental management, given the broader context of the Burkholderia genus's ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia stagnalis
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia stagnalis strain MSMB1960WGS MSMB1960WGS_99, whole

Gene Summary

Adenine Count

1218650 bp

Thymine Count

1209551 bp

Guanine Count

2566243 bp

Cytosine Count

2531020 bp

Genome Length

7525464 bp

Protein-coding Genes

6345 genes

Non-Coding Genes

151 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
urease subunit gammaWT44_26800Not AvailableNegative6054710 - 605501211100.7
urease accessory protein uredWT44_26805Not AvailableNegative6055274 - 605614930946.9
urea abc transporter atp-binding subunit urteWT44_26810Not AvailableNegative6056328 - 605702024986.5
urea abc transporter atp-binding protein urtdWT44_26815Not AvailableNegative6057025 - 605788230867.3
urea abc transporter permease subunit urtcWT44_26820Not AvailableNegative6057879 - 605906642213.6
urea abc transporter permeaseWT44_26825Not AvailableNegative6059068 - 606044448235.6
branched-chain amino acid abc transporter substrate-binding proteinWT44_26830Not AvailableNegative6060803 - 606211047252.9
omega amino acid--pyruvate aminotransferaseWT44_26835Not AvailablePositive6062405 - 606373347736.3
sulfurtransferaseWT44_26840Not AvailableNegative6063856 - 606417911891.3
protein-l-isoaspartate o-methyltransferaseWT44_26845Not AvailableNegative6064188 - 606484124060.3

Displaying genes 5261 – 5270 of 6496 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

6 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00034334-amino-4-deoxychorismateC10H10NO5Chemical structure of 4-amino-4-deoxychorismate133442-18-9
Average224.193Da
Monoisotopic224.056446006Da

Displaying 1–6 of 6 metabolites

Health Effects

No health effects information available for this bacterium.