Coprobacter secundus str. 177

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Barnesiellaceae

Genus

Coprobacter

Description

Coprobacter secundus str. 177 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This organism is part of the microbial community and can be studied through its genetic information, which is accessible via the accession JTDA00000000.2. The Gram-negative classification indicates that Coprobacter secundus str. 177 possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and other microorganisms. The rod shape is a common morphology among many bacteria, often associated with specific growth patterns and ecological niches. The presence of only one replicon suggests a streamlined genetic architecture, which may reflect its adaptation to specific environmental conditions. Such characteristics can be significant in understanding the organism's role within its ecosystem, particularly in nutrient cycling and interactions with other microbial species. From a biological and ecological perspective, studying Coprobacter secundus str. 177 can provide insights into the diversity and complexity of microbiomes, particularly in relation to gut or soil ecosystems where such bacteria are often found. Understanding its traits and genetic makeup can shed light on its functional roles within these communities and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBarnesiellaceae
GenusCoprobacter
SpeciesCoprobacter secundus
Strain177

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Coprobacter secundus strain 177 30, whole genome shotgun sequence.

Gene Summary

Adenine Count

1276585 bp

Thymine Count

1298172 bp

Guanine Count

788538 bp

Cytosine Count

777477 bp

Genome Length

4140772 bp

Protein-coding Genes

3074 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna (uracil(1939)-c(5))-methyltransferase rlmdPU94_002510Not AvailableNegative597863 - 59927253808.1
pyruvate, phosphate dikinasePU94_002515Not AvailablePositive599487 - 60220499911.5
helix-turn-helix domain-containing proteinPU94_002520Not AvailableNegative602286 - 60315833438.8
efflux rnd transporter periplasmic adaptor subunitPU94_002525Not AvailablePositive603332 - 60436038025.5
efflux rnd transporter permease subunitPU94_002530Not AvailablePositive604357 - 607446115574.0
tolc family proteinPU94_002535Not AvailablePositive607450 - 60875149376.4
glycerophosphodiester phosphodiesterase family proteinPU94_002540Not AvailableNegative608808 - 60957829254.5
duf3078 domain-containing proteinPU94_002545Not AvailableNegative609678 - 61050531657.7
hypothetical proteinPU94_002550Not AvailablePositive610789 - 61123217700.7
winged helix dna-binding domain-containing proteinPU94_002555Not AvailablePositive611355 - 61239840095.5

Displaying genes 501 – 510 of 3134 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.