Coprobacter secundus str. 177

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Barnesiellaceae

Genus

Coprobacter

Description

Coprobacter secundus str. 177 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This organism is part of the microbial community and can be studied through its genetic information, which is accessible via the accession JTDA00000000.2. The Gram-negative classification indicates that Coprobacter secundus str. 177 possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and other microorganisms. The rod shape is a common morphology among many bacteria, often associated with specific growth patterns and ecological niches. The presence of only one replicon suggests a streamlined genetic architecture, which may reflect its adaptation to specific environmental conditions. Such characteristics can be significant in understanding the organism's role within its ecosystem, particularly in nutrient cycling and interactions with other microbial species. From a biological and ecological perspective, studying Coprobacter secundus str. 177 can provide insights into the diversity and complexity of microbiomes, particularly in relation to gut or soil ecosystems where such bacteria are often found. Understanding its traits and genetic makeup can shed light on its functional roles within these communities and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBarnesiellaceae
GenusCoprobacter
SpeciesCoprobacter secundus
Strain177

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Coprobacter secundus strain 177 30, whole genome shotgun sequence.

Gene Summary

Adenine Count

1276585 bp

Thymine Count

1298172 bp

Guanine Count

788538 bp

Cytosine Count

777477 bp

Genome Length

4140772 bp

Protein-coding Genes

3074 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinPU94_008210Not AvailablePositive2166242 - 216811671169.9
hypothetical proteinPU94_008215Not AvailablePositive2168164 - 216856214999.2
duf4466 family proteinPU94_008220Not AvailablePositive2168576 - 216955636439.2
bnr-4 repeat-containing proteinPU94_008225Not AvailablePositive2169687 - 217106352755.3
glycoside hydrolase family 5 proteinPU94_008230Not AvailablePositive2171112 - 217216440571.5
glycoside hydrolase family 88 proteinPU94_008235Not AvailablePositive2172172 - 217338646533.9
heparinase ii/iii family proteinPU94_008240Not AvailablePositive2173394 - 217528971902.7
alpha-l-fucosidasePU94_008245Not AvailablePositive2175307 - 217668953781.3
glycosidasePU94_008250Not AvailablePositive2176720 - 217788944320.7
mfs transporterPU94_008255Not AvailablePositive2177909 - 217930352309.8

Displaying genes 1631 – 1640 of 3134 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.