Coprobacter secundus str. 177

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Barnesiellaceae

Genus

Coprobacter

Description

Coprobacter secundus str. 177 is a Gram-negative, rod-shaped bacterium characterized by a single replicon. This organism is part of the microbial community and can be studied through its genetic information, which is accessible via the accession JTDA00000000.2. The Gram-negative classification indicates that Coprobacter secundus str. 177 possesses a thin peptidoglycan layer surrounded by an outer membrane, which may influence its interactions with the environment and other microorganisms. The rod shape is a common morphology among many bacteria, often associated with specific growth patterns and ecological niches. The presence of only one replicon suggests a streamlined genetic architecture, which may reflect its adaptation to specific environmental conditions. Such characteristics can be significant in understanding the organism's role within its ecosystem, particularly in nutrient cycling and interactions with other microbial species. From a biological and ecological perspective, studying Coprobacter secundus str. 177 can provide insights into the diversity and complexity of microbiomes, particularly in relation to gut or soil ecosystems where such bacteria are often found. Understanding its traits and genetic makeup can shed light on its functional roles within these communities and its potential applications in biotechnology or environmental management.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBarnesiellaceae
GenusCoprobacter
SpeciesCoprobacter secundus
Strain177

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Coprobacter secundus strain 177 30, whole genome shotgun sequence.

Gene Summary

Adenine Count

1276585 bp

Thymine Count

1298172 bp

Guanine Count

788538 bp

Cytosine Count

777477 bp

Genome Length

4140772 bp

Protein-coding Genes

3074 genes

Non-Coding Genes

60 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phenylacetate--coa ligase family proteinPU94_000440Not AvailablePositive108389 - 10969049056.3
amino acid-binding proteinPU94_000445Not AvailablePositive109704 - 11012915571.1
outer membrane protein assembly factor bamdPU94_000450Not AvailablePositive110288 - 11109131742.7
dna-directed rna polymerase subunit omegaPU94_000455Not AvailablePositive111104 - 11143612792.1
hypothetical proteinPU94_000460Not AvailableNegative111744 - 11234023394.1
nickel-responsive transcriptional regulator nikrPU94_000465Not AvailablePositive112474 - 11287515395.7
tonb-dependent receptor plug domain-containing proteinPU94_000470Not AvailablePositive113076 - 11495069757.7
carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunitPU94_000475Not AvailableNegative115023 - 118247119959.0
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunitPU94_000480Not AvailableNegative118277 - 11934139995.4
diaminopimelate epimerasePU94_000485Not AvailablePositive119688 - 12053031113.4

Displaying genes 91 – 100 of 3134 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.