Paenibacillus tyrphae

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus tyrphae is a bacterial species isolated from a Malaysian swamp environment. This organism is characterized by having a single replicon, which is an important trait for its genomic structure and replication process. The specific genomic sequence of Paenibacillus tyrphae can be referenced under the accession number JNVM00000000.1. This bacterium’s habitat in a swamp suggests its potential role in the decomposition of organic matter and nutrient cycling within such wetland ecosystems. Swamps are known for their diverse microbial communities that contribute significantly to the ecological processes of these environments. The presence of Paenibacillus tyrphae may indicate its adaptation to the unique conditions of swamp habitats, including fluctuating water levels and varying organic substrates. The ecological insights provided by the existence of Paenibacillus tyrphae highlight the importance of microbial diversity in maintaining the health and function of swamp ecosystems. These microbes can play crucial roles in biogeochemical cycles, including nitrogen and carbon cycling, which are vital for the overall productivity and sustainability of such habitats. Understanding the specific roles and mechanisms of Paenibacillus tyrphae within its habitat could provide valuable information for ecological studies and conservation efforts related to wetland environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus tyrphae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMalaysian swamp
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus tyrfis strain MSt1 Contig_109, whole genome shotgun

Gene Summary

Adenine Count

1884690 bp

Thymine Count

1889607 bp

Guanine Count

2106035 bp

Cytosine Count

2152847 bp

Genome Length

8033195 bp

Protein-coding Genes

6351 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyl-coa dehydrogenaseET33_22885Not AvailableNegative6820966 - 682210541142.2
branched-chain alpha-keto acid dehydrogenase subunit e2ET33_22890Not AvailableNegative6822141 - 682343646899.8
2-oxoisovalerate dehydrogenaseET33_22895Not AvailableNegative6823455 - 682443836081.5
2-oxoisovalerate dehydrogenaseET33_22900Not AvailableNegative6824451 - 682546437133.0
hypothetical proteinET33_22910Not AvailableNegative6827089 - 6830106115441.0
tryptophan rna-binding attenuator protein inhibitory proteinET33_22915Not AvailablePositive6830285 - 68304375464.66
lysr family transcriptional regulatorET33_22920Not AvailableNegative6830504 - 683139133938.8
mfs transporterET33_22925Not AvailablePositive6831504 - 683290150795.7
nad(p)h nitroreductaseET33_22930Not AvailableNegative6832987 - 683364924583.8
tetr family transcriptional regulatorET33_22935Not AvailablePositive6833839 - 683442622479.4

Displaying genes 5571 – 5580 of 6563 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.