Paenibacillus tyrphae

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus tyrphae is a bacterial species isolated from a Malaysian swamp environment. This organism is characterized by having a single replicon, which is an important trait for its genomic structure and replication process. The specific genomic sequence of Paenibacillus tyrphae can be referenced under the accession number JNVM00000000.1. This bacterium’s habitat in a swamp suggests its potential role in the decomposition of organic matter and nutrient cycling within such wetland ecosystems. Swamps are known for their diverse microbial communities that contribute significantly to the ecological processes of these environments. The presence of Paenibacillus tyrphae may indicate its adaptation to the unique conditions of swamp habitats, including fluctuating water levels and varying organic substrates. The ecological insights provided by the existence of Paenibacillus tyrphae highlight the importance of microbial diversity in maintaining the health and function of swamp ecosystems. These microbes can play crucial roles in biogeochemical cycles, including nitrogen and carbon cycling, which are vital for the overall productivity and sustainability of such habitats. Understanding the specific roles and mechanisms of Paenibacillus tyrphae within its habitat could provide valuable information for ecological studies and conservation efforts related to wetland environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus tyrphae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMalaysian swamp
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus tyrfis strain MSt1 Contig_109, whole genome shotgun

Gene Summary

Adenine Count

1884690 bp

Thymine Count

1889607 bp

Guanine Count

2106035 bp

Cytosine Count

2152847 bp

Genome Length

8033195 bp

Protein-coding Genes

6351 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinET33_15450Not AvailableNegative5464498 - 546497117954.0
glutamate dehydrogenaseET33_15455Not AvailablePositive5465197 - 546645945484.9
dihydrodipicolinate synthaseET33_15465Not AvailableNegative5466936 - 546782631421.8
lysr family transcriptional regulatorET33_15470Not AvailablePositive5467957 - 546882932768.2
hypothetical proteinET33_15475Not AvailablePositive5468835 - 546914311509.8
transposaseET33_15485Not AvailablePositive5470100 - 547092131820.3
hypothetical proteinET33_15490Not AvailableNegative5471264 - 547176418565.9
deor faimly transcriptional regulatorET33_15495Not AvailableNegative5471837 - 547277836200.4
hypothetical proteinET33_15500Not AvailablePositive5472945 - 54731277046.57
copper amine oxidaseET33_15505Not AvailableNegative5473156 - 547429240747.3

Displaying genes 4521 – 4530 of 6563 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.