Paenibacillus tyrphae

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus tyrphae is a bacterial species isolated from a Malaysian swamp environment. This organism is characterized by having a single replicon, which is an important trait for its genomic structure and replication process. The specific genomic sequence of Paenibacillus tyrphae can be referenced under the accession number JNVM00000000.1. This bacterium’s habitat in a swamp suggests its potential role in the decomposition of organic matter and nutrient cycling within such wetland ecosystems. Swamps are known for their diverse microbial communities that contribute significantly to the ecological processes of these environments. The presence of Paenibacillus tyrphae may indicate its adaptation to the unique conditions of swamp habitats, including fluctuating water levels and varying organic substrates. The ecological insights provided by the existence of Paenibacillus tyrphae highlight the importance of microbial diversity in maintaining the health and function of swamp ecosystems. These microbes can play crucial roles in biogeochemical cycles, including nitrogen and carbon cycling, which are vital for the overall productivity and sustainability of such habitats. Understanding the specific roles and mechanisms of Paenibacillus tyrphae within its habitat could provide valuable information for ecological studies and conservation efforts related to wetland environments.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus tyrphae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMalaysian swamp
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paenibacillus tyrfis strain MSt1 Contig_109, whole genome shotgun

Gene Summary

Adenine Count

1884690 bp

Thymine Count

1889607 bp

Guanine Count

2106035 bp

Cytosine Count

2152847 bp

Genome Length

8033195 bp

Protein-coding Genes

6351 genes

Non-Coding Genes

212 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
orotate phosphoribosyltransferaseET33_25640Not AvailablePositive1197084 - 119774323575.3
rna polymerase sigma24 factorET33_25645Not AvailablePositive1197880 - 119839820408.3
abc transporterET33_25655Not AvailablePositive1199534 - 120048735100.6
hypothetical proteinET33_25660Not AvailablePositive1200484 - 120136532344.7
methylthioribulose-1-phosphate dehydrataseET33_25665Not AvailableNegative1201493 - 120213723967.7
2-hydroxy-3-keto-5-methylthiopentenyl-1- phosphate phosphataseET33_25670Not AvailableNegative1202127 - 120279525547.7
2,3-diketo-5-methylthiopentyl-1-phosphate enolaseET33_25675Not AvailableNegative1202792 - 120409045958.4
pyrroline-5-carboxylate reductaseET33_25680Not AvailableNegative1204106 - 120497230343.8
gamma-glutamyl phosphate reductaseET33_25685Not AvailableNegative1205020 - 120626744684.9
gamma-glutamyl kinaseET33_25690Not AvailableNegative1206335 - 120746840402.4

Displaying genes 1091 – 1100 of 6563 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.