Dyadobacter sediminis str. Z12

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Dyadobacter

Description

Dyadobacter sediminis str. Z12 is a bacterial strain notable for its presence of flagella, which may contribute to its motility and ecological interactions in its environment. It possesses a single replicon, indicating a streamlined genomic structure that can be beneficial for rapid adaptation and reproduction under varying environmental conditions. The strain is cataloged under the accession number VCEI00000000.1, which provides a reference point for researchers interested in its genetic and functional analysis. The presence of flagella suggests that Dyadobacter sediminis str. Z12 is capable of active movement, which may enhance its ability to explore and colonize sedimentary environments. This trait could play a significant role in its ecological niche, potentially allowing it to access nutrients and interact with other microorganisms in sediment ecosystems. Overall, the characteristics of Dyadobacter sediminis str. Z12, particularly its flagella and genomic organization, may contribute to its adaptability and ecological success in sediment environments. Understanding these traits can provide insights into the ecological roles that such bacteria play in nutrient cycling and sediment health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusDyadobacter
SpeciesDyadobacter sediminis
StrainZ12

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyadobacter sediminis strain Z12 NODE_9, whole genome shotgun

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

4863 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
apc family permeaseFEM55_00090Not AvailablePositive23604 - 2493847924.6
tonb-dependent receptorFEM55_00095Not AvailablePositive25003 - 2743290089.0
tetratricopeptide repeat proteinFEM55_00100Not AvailablePositive27602 - 2937166947.9
duf4292 domain-containing proteinFEM55_00105Not AvailablePositive29361 - 3020932158.4
peptidase m23FEM55_00110Not AvailablePositive30302 - 3164251697.1
3-methyl-2-oxobutanoate hydroxymethyltransferaseFEM55_00115Not AvailablePositive31804 - 3262229642.0
rlua family pseudouridine synthaseFEM55_00120Not AvailablePositive32650 - 3338128121.0
prolipoprotein diacylglyceryl transferaseFEM55_00125Not AvailablePositive33390 - 3370412692.0
hypothetical proteinFEM55_00130Not AvailableNegative33731 - 3601685111.6
hypothetical proteinFEM55_00135Not AvailableNegative36104 - 3746251048.7

Displaying genes 21 – 30 of 4906 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.