Cecembia rubra str. DSM 28057

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Cecembia

Description

Cecembia rubra str. DSM 28057 is a Gram-negative bacterium characterized by its rod-shaped morphology. It has been classified with a single replicon, indicating a streamlined genomic structure. The strain is associated with the accession number PYGF00000000.1, which serves as a reference for genetic and genomic studies. The Gram-negative nature of Cecembia rubra suggests that it possesses an outer membrane containing lipopolysaccharides, a feature commonly associated with various environmental adaptations and interactions with other microorganisms. The single replicon structure may provide insights into its genetic stability and evolutionary strategies in its ecological niche. Understanding the traits of Cecembia rubra str. DSM 28057 can contribute to the broader field of microbiology, especially in the study of bacterial ecology and evolution. This strain may play a role in specific ecosystems, potentially influencing nutrient cycles or interactions with other microbial species. The distinct characteristics of this bacterium position it as a valuable subject for further research into its ecological functions and applications within its native environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusCecembia
SpeciesCecembia rubra
StrainDSM 28057

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Cecembia rubra strain DSM 28057 Ga0181025_131, whole genome

Gene Summary

Adenine Count

1429249 bp

Thymine Count

1443707 bp

Guanine Count

933822 bp

Cytosine Count

939996 bp

Genome Length

4747752 bp

Protein-coding Genes

4051 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ca-activated chloride channel family proteinCLV48_10131Not AvailableNegative32111 - 3307636021.2
outer membrane receptor for ferrienterochelin and colicinCLV48_10132Not AvailablePositive33189 - 3557990555.1
uncharacterized protein duf4249CLV48_10133Not AvailablePositive35581 - 3642632656.9
putative n6-adenine-specific dna methylaseCLV48_10134Not AvailablePositive36462 - 3762544167.9
n-acetylated-alpha-linked acidic dipeptidaseCLV48_10135Not AvailableNegative37664 - 3979679069.9
adp-ribose pyrophosphatase yjhb (nudix family)CLV48_10136Not AvailablePositive39844 - 4079436781.1
putative purr-regulated permease permCLV48_10137Not AvailablePositive40834 - 4192841108.0
Trna-leuNot AvailableNot AvailablePositive41941 - 42022Not Available
hypothetical proteinCLV48_10139Not AvailableNegative42295 - 424957765.35
Ncrna_class:autocatalytically_spliced_intronNot AvailableNot AvailablePositive42549 - 42624Not Available

Displaying genes 61 – 70 of 4109 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.