Halorubrum sp. E3

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum sp. E3 is a rod-shaped archaeon known for its adaptability to extreme environments, particularly hypersaline conditions. One of its defining characteristics is the presence of flagella, which suggests that this organism is motile, allowing it to navigate its often harsh surroundings effectively. Genetically, Halorubrum sp. E3 has a single replicon, indicating a streamlined genomic structure that is common among many extremophiles. This trait may contribute to the organism's efficiency in replication and adaptation to fluctuating environmental conditions. The accession number for Halorubrum sp. E3 is NHPI00000000.1, which provides a reference for researchers seeking to explore its genetic and functional attributes further. From a biological and ecological perspective, the presence of flagella in Halorubrum sp. E3 may enhance its survival and competitive edge in extreme saline habitats. The ability to move toward favorable conditions, such as areas with optimal nutrient availability or less extreme salinity, underscores the ecological significance of motility in extremophiles. This adaptability is crucial for maintaining population dynamics and ecosystem function in hypersaline environments, where few organisms can thrive.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum sp. E3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum sp. E3 contig2568, whole genome shotgun sequence.

Gene Summary

Adenine Count

730074 bp

Thymine Count

719652 bp

Guanine Count

1376157 bp

Cytosine Count

1378468 bp

Genome Length

4204396 bp

Protein-coding Genes

4973 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDJ71_27400Not AvailableNegative4029626 - 403011418216.4
hypothetical proteinDJ71_27405Not AvailableNegative4030162 - 403085326158.5
methylmalonyl-coa mutaseDJ71_27410Not AvailablePositive4031175 - 403159415022.8
transcription initiation factor iib 3DJ71_27415Not AvailablePositive4031787 - 403241123565.9
sam-dependent methyltransferaseDJ71_27420Not AvailableNegative4032412 - 403279312892.5
oxidoreductaseDJ71_27425Not AvailableNegative4032802 - 403358428908.5
phosphate abc transporter, permease protein pstaDJ71_27430Not AvailableNegative4033585 - 403395012934.8
phosphate abc transporter permease subunit pstcDJ71_27435Not AvailableNegative4033950 - 403492433988.9
phosphate abc transporter substrate-binding proteinDJ71_27440Not AvailableNegative4034978 - 403574027910.1
preprotein translocase subunit tataDJ71_27445Not AvailablePositive4035927 - 40361788816.67

Displaying genes 4811 – 4820 of 5037 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.