Halorubrum sp. E3

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum sp. E3 is a rod-shaped archaeon known for its adaptability to extreme environments, particularly hypersaline conditions. One of its defining characteristics is the presence of flagella, which suggests that this organism is motile, allowing it to navigate its often harsh surroundings effectively. Genetically, Halorubrum sp. E3 has a single replicon, indicating a streamlined genomic structure that is common among many extremophiles. This trait may contribute to the organism's efficiency in replication and adaptation to fluctuating environmental conditions. The accession number for Halorubrum sp. E3 is NHPI00000000.1, which provides a reference for researchers seeking to explore its genetic and functional attributes further. From a biological and ecological perspective, the presence of flagella in Halorubrum sp. E3 may enhance its survival and competitive edge in extreme saline habitats. The ability to move toward favorable conditions, such as areas with optimal nutrient availability or less extreme salinity, underscores the ecological significance of motility in extremophiles. This adaptability is crucial for maintaining population dynamics and ecosystem function in hypersaline environments, where few organisms can thrive.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum sp. E3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum sp. E3 contig2568, whole genome shotgun sequence.

Gene Summary

Adenine Count

730074 bp

Thymine Count

719652 bp

Guanine Count

1376157 bp

Cytosine Count

1378468 bp

Genome Length

4204396 bp

Protein-coding Genes

4973 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal 5'-phosphate synthase glutaminase subunit pdxtDJ71_21555Not AvailableNegative3179183 - 317960714811.6
preprotein translocase subunit sec61betaDJ71_21560Not AvailableNegative3179729 - 31798905596.8
thiol reductase thioredoxinDJ71_21565Not AvailablePositive3180080 - 31803499992.54
50s ribosomal protein l40eDJ71_21570Not AvailablePositive3180447 - 31805965709.89
gnat family n-acetyltransferaseDJ71_21575Not AvailableNegative3180757 - 31808814699.51
hypothetical proteinDJ71_21580Not AvailableNegative3180882 - 318143417705.2
metal-binding proteinDJ71_21585Not AvailableNegative3181714 - 318199210446.2
cell surface proteinDJ71_21590Not AvailableNegative3182086 - 31823018106.42
sulfite oxidaseDJ71_21595Not AvailablePositive3182543 - 318293314567.6
hypothetical proteinDJ71_21605Not AvailableNegative3184045 - 318442814029.5

Displaying genes 3801 – 3810 of 5037 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.