Halorubrum sp. E3

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum sp. E3 is a rod-shaped archaeon known for its adaptability to extreme environments, particularly hypersaline conditions. One of its defining characteristics is the presence of flagella, which suggests that this organism is motile, allowing it to navigate its often harsh surroundings effectively. Genetically, Halorubrum sp. E3 has a single replicon, indicating a streamlined genomic structure that is common among many extremophiles. This trait may contribute to the organism's efficiency in replication and adaptation to fluctuating environmental conditions. The accession number for Halorubrum sp. E3 is NHPI00000000.1, which provides a reference for researchers seeking to explore its genetic and functional attributes further. From a biological and ecological perspective, the presence of flagella in Halorubrum sp. E3 may enhance its survival and competitive edge in extreme saline habitats. The ability to move toward favorable conditions, such as areas with optimal nutrient availability or less extreme salinity, underscores the ecological significance of motility in extremophiles. This adaptability is crucial for maintaining population dynamics and ecosystem function in hypersaline environments, where few organisms can thrive.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum sp. E3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum sp. E3 contig2568, whole genome shotgun sequence.

Gene Summary

Adenine Count

730074 bp

Thymine Count

719652 bp

Guanine Count

1376157 bp

Cytosine Count

1378468 bp

Genome Length

4204396 bp

Protein-coding Genes

4973 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
succinate dehydrogenaseDJ71_19565Not AvailablePositive2894962 - 289555422693.7
trmb family transcriptional regulatorDJ71_19575Not AvailablePositive2897665 - 28978928151.84
uracil-dna glycosylaseDJ71_19580Not AvailablePositive2897975 - 289835613758.9
rubrerythrinDJ71_19585Not AvailableNegative2898419 - 289887416781.2
alpha hydrolaseDJ71_19590Not AvailableNegative2898979 - 289957221882.1
dna-binding proteinDJ71_19595Not AvailableNegative2899573 - 289992613354.6
hypothetical proteinDJ71_19600Not AvailablePositive2900050 - 29002336737.82
sulfurtransferaseDJ71_19605Not AvailableNegative2900411 - 290074611971.8
preprotein translocase subunit tatbDJ71_19610Not AvailableNegative2900749 - 290104810948.6
pyridoxal-5'-phosphate-dependent protein subunit betaDJ71_19615Not AvailablePositive2901199 - 290162915284.7

Displaying genes 3451 – 3460 of 5037 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.