Halorubrum sp. E3

Rod

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halorubrum

Description

Halorubrum sp. E3 is a rod-shaped archaeon known for its adaptability to extreme environments, particularly hypersaline conditions. One of its defining characteristics is the presence of flagella, which suggests that this organism is motile, allowing it to navigate its often harsh surroundings effectively. Genetically, Halorubrum sp. E3 has a single replicon, indicating a streamlined genomic structure that is common among many extremophiles. This trait may contribute to the organism's efficiency in replication and adaptation to fluctuating environmental conditions. The accession number for Halorubrum sp. E3 is NHPI00000000.1, which provides a reference for researchers seeking to explore its genetic and functional attributes further. From a biological and ecological perspective, the presence of flagella in Halorubrum sp. E3 may enhance its survival and competitive edge in extreme saline habitats. The ability to move toward favorable conditions, such as areas with optimal nutrient availability or less extreme salinity, underscores the ecological significance of motility in extremophiles. This adaptability is crucial for maintaining population dynamics and ecosystem function in hypersaline environments, where few organisms can thrive.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalorubrum
SpeciesHalorubrum sp. E3
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halorubrum sp. E3 contig2568, whole genome shotgun sequence.

Gene Summary

Adenine Count

730074 bp

Thymine Count

719652 bp

Guanine Count

1376157 bp

Cytosine Count

1378468 bp

Genome Length

4204396 bp

Protein-coding Genes

4973 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDJ71_08300Not AvailablePositive1166499 - 116692716232.9
serine hydroxymethyltransferaseDJ71_08305Not AvailablePositive1167756 - 116840022348.8
hypothetical proteinDJ71_08310Not AvailablePositive1168475 - 116880311214.9
elongation factor ef-2DJ71_08315Not AvailablePositive1168804 - 117018951218.5
duf3592 domain-containing proteinDJ71_08320Not AvailableNegative1170298 - 117078016550.0
amino acid-binding proteinDJ71_08325Not AvailablePositive1171215 - 117184421879.2
homoserine dehydrogenaseDJ71_08330Not AvailablePositive1171841 - 117283333489.9
translation elongation factor ef-1 subunit alphaDJ71_08335Not AvailablePositive1173019 - 117428445672.2
30s ribosomal protein s10DJ71_08340Not AvailablePositive1174288 - 117459611430.5
rhomboid family intramembrane serine proteaseDJ71_08345Not AvailableNegative1174684 - 11748655990.48

Displaying genes 1461 – 1470 of 5037 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.