Vibrio ishigakensis str. JCM 19241

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio ishigakensis str. JCM 19241 is characterized by having a single replicon, which is significant for understanding its genetic structure and replication processes. The strain is cataloged under the accession number BBSC00000000.1, which provides a reference for its genomic data. As a member of the Vibrio genus, V. ishigakensis typically inhabits marine environments, suggesting that it may play a role in aquatic ecosystems. This strain can be of particular interest in studies related to microbial diversity in coastal waters and the potential ecological interactions it may have with other marine organisms. The presence of a single replicon can indicate a streamlined genomic organization, potentially influencing its adaptability and survival in specific niches within marine habitats. Understanding the genomic features of V. ishigakensis may enhance our knowledge of its ecological functions and interactions in the marine microbiome, contributing to broader studies on microbial ecology and environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio ishigakensis
StrainJCM 19241

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio ishigakensis str. JCM 19241
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio ishigakensis DNA, contig00033, strain: JCM19241, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

6132 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
peptide deformylaseJCM19241_2003Not AvailableNegative4544575 - 454509319620.5
rossmann fold nucleotide-binding protein smfJCM19241_2004Not AvailablePositive4545398 - 454631533095.7
hypothetical proteinJCM19241_2005Not AvailablePositive4546318 - 454679118350.9
similar to c-terminal zn-finger domain of dna topoisomerase iJCM19241_2006Not AvailablePositive4546882 - 454733416785.2
phosphoribosylaminoimidazole carboxylase atpase subunitJCM19241_2007Not AvailableNegative4547378 - 454849040257.2
phosphoribosylaminoimidazole carboxylase catalytic subunitJCM19241_2008Not AvailableNegative4548495 - 454898016726.4
tsac proteinJCM19241_2009Not AvailablePositive4549174 - 454972219922.8
coproporphyrinogen iii oxidaseJCM19241_2010Not AvailablePositive4549725 - 455063034820.0
shikimate 5-dehydrogenase i alphaJCM19241_2011Not AvailablePositive4550697 - 455153030194.8
hypothetical proteinJCM19241_2012Not AvailablePositive4551637 - 45517925910.9

Displaying genes 5901 – 5910 of 6218 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.