Vibrio ishigakensis str. JCM 19241

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio ishigakensis str. JCM 19241 is characterized by having a single replicon, which is significant for understanding its genetic structure and replication processes. The strain is cataloged under the accession number BBSC00000000.1, which provides a reference for its genomic data. As a member of the Vibrio genus, V. ishigakensis typically inhabits marine environments, suggesting that it may play a role in aquatic ecosystems. This strain can be of particular interest in studies related to microbial diversity in coastal waters and the potential ecological interactions it may have with other marine organisms. The presence of a single replicon can indicate a streamlined genomic organization, potentially influencing its adaptability and survival in specific niches within marine habitats. Understanding the genomic features of V. ishigakensis may enhance our knowledge of its ecological functions and interactions in the marine microbiome, contributing to broader studies on microbial ecology and environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio ishigakensis
StrainJCM 19241

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio ishigakensis str. JCM 19241
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio ishigakensis DNA, contig00033, strain: JCM19241, whole

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

6132 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oligopeptide transport system permease protein oppbJCM19241_3339Not AvailablePositive2108504 - 210946035544.7
dipeptide-binding abc transporterJCM19241_3340Not AvailablePositive2109475 - 211098655278.6
dipeptide transport system permease protein dppbJCM19241_3341Not AvailablePositive2111038 - 211153818007.6
dipeptide transport system permease protein dppbJCM19241_3342Not AvailablePositive2111577 - 211190912274.4
dipeptide transport system permease protein dppcJCM19241_3343Not AvailablePositive2111915 - 211267627454.5
dipeptide transport system permease protein dppcJCM19241_3344Not AvailablePositive2112649 - 21127684222.27
isoaspartyl dipeptidaseJCM19241_3345Not AvailablePositive2112778 - 211395041646.8
gnat family acetyltransferase yjcfJCM19241_3346Not AvailablePositive2114041 - 211445715312.2
lsu ribosomal protein l25pJCM19241_3347Not AvailableNegative2114597 - 211487510287.5
atp-dependent rna helicase yejhJCM19241_3348Not AvailableNegative2115050 - 211680166424.3

Displaying genes 2741 – 2750 of 6218 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.