Vibrio ishigakensis str. JCM 19231

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio ishigakensis str. JCM 19231 is a bacterial strain characterized by having a single replicon. The strain is cataloged under the accession number BBRZ00000000.1, which indicates its genomic data is available in public databases for further study. This species of Vibrio is known for its role in aquatic ecosystems, where it can be found in marine environments. As a member of the Vibrionaceae family, V. ishigakensis contributes to the microbial diversity in these habitats. The presence of Vibrio species in coastal waters is often linked to various ecological functions, including nutrient cycling and interactions with other marine organisms. Vibrio ishigakensis may play a role in the health of marine ecosystems, potentially influencing the dynamics of microbial communities and the overall ecological balance. The availability of its genomic information allows for deeper insights into its metabolic capabilities and ecological interactions, which may be valuable for understanding its role within marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio ishigakensis
StrainJCM 19231

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio ishigakensis str. JCM 19231
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio ishigakensis DNA, contig00260, whole genome shotgun

Gene Summary

Adenine Count

1263039 bp

Thymine Count

1273974 bp

Guanine Count

1106917 bp

Cytosine Count

1070021 bp

Genome Length

4713951 bp

Protein-coding Genes

5870 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mfs transporterJCM19231_122Not AvailableNegative4375787 - 43760208176.14
rtx toxin, putativeJCM19231_3404Not AvailableNegative4377795 - 437999678099.7
rtx toxin, putativeJCM19231_3405Not AvailableNegative4379993 - 438060422306.2
rtx toxin, putativeJCM19231_3406Not AvailableNegative4380811 - 438226550746.4
rtx toxin, putativeJCM19231_3407Not AvailableNegative4382262 - 438343740662.4
t1ss secreted agglutininJCM19231_3358Not AvailablePositive4383549 - 438593985983.2
lsu m5c1962 methyltransferase rlmiJCM19231_3359Not AvailableNegative4386301 - 438748843888.6
trna 2-thiouridine synthesizing protein eJCM19231_3360Not AvailableNegative4387877 - 438820612425.0
putative tegt family carrier/transport proteinJCM19231_3361Not AvailableNegative4388302 - 438896423855.0
abc-type polar amino acid transport system, atpase componentJCM19231_3362Not AvailableNegative4389212 - 438996128486.6

Displaying genes 5561 – 5570 of 5926 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.