Vibrio ishigakensis str. JCM 19231

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio ishigakensis str. JCM 19231 is a bacterial strain characterized by having a single replicon. The strain is cataloged under the accession number BBRZ00000000.1, which indicates its genomic data is available in public databases for further study. This species of Vibrio is known for its role in aquatic ecosystems, where it can be found in marine environments. As a member of the Vibrionaceae family, V. ishigakensis contributes to the microbial diversity in these habitats. The presence of Vibrio species in coastal waters is often linked to various ecological functions, including nutrient cycling and interactions with other marine organisms. Vibrio ishigakensis may play a role in the health of marine ecosystems, potentially influencing the dynamics of microbial communities and the overall ecological balance. The availability of its genomic information allows for deeper insights into its metabolic capabilities and ecological interactions, which may be valuable for understanding its role within marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio ishigakensis
StrainJCM 19231

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio ishigakensis str. JCM 19231
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio ishigakensis DNA, contig00260, whole genome shotgun

Gene Summary

Adenine Count

1263039 bp

Thymine Count

1273974 bp

Guanine Count

1106917 bp

Cytosine Count

1070021 bp

Genome Length

4713951 bp

Protein-coding Genes

5870 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative permease permJCM19231_3265Not AvailablePositive3014403 - 301497220635.9
hypothetical proteinJCM19231_3266Not AvailableNegative3014965 - 30151597503.46
thiol peroxidase, bcp-typeJCM19231_3267Not AvailableNegative3015624 - 301608817410.9
glycine cleavage system transcriptional antiactivator gcvrJCM19231_3268Not AvailableNegative3016102 - 301668021003.9
dihydrodipicolinate synthaseJCM19231_3269Not AvailablePositive3016891 - 301776931217.5
outer membrane protein nlpbJCM19231_3270Not AvailablePositive3017815 - 301872034392.4
hypothetical proteinJCM19231_3271Not AvailablePositive3018714 - 30188605140.07
hypothetical proteinJCM19231_3272Not AvailableNegative3018878 - 30191209114.42
d,d-carboxypeptidase family proteinJCM19231_3273Not AvailableNegative3019206 - 301985624163.6
n-succinyl-l,l-diaminopimelate desuccinylaseJCM19231_3274Not AvailableNegative3019861 - 302099741426.4

Displaying genes 3831 – 3840 of 5926 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.