Vibrio ishigakensis str. JCM 19231

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio ishigakensis str. JCM 19231 is a bacterial strain characterized by having a single replicon. The strain is cataloged under the accession number BBRZ00000000.1, which indicates its genomic data is available in public databases for further study. This species of Vibrio is known for its role in aquatic ecosystems, where it can be found in marine environments. As a member of the Vibrionaceae family, V. ishigakensis contributes to the microbial diversity in these habitats. The presence of Vibrio species in coastal waters is often linked to various ecological functions, including nutrient cycling and interactions with other marine organisms. Vibrio ishigakensis may play a role in the health of marine ecosystems, potentially influencing the dynamics of microbial communities and the overall ecological balance. The availability of its genomic information allows for deeper insights into its metabolic capabilities and ecological interactions, which may be valuable for understanding its role within marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio ishigakensis
StrainJCM 19231

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio ishigakensis str. JCM 19231
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio ishigakensis DNA, contig00260, whole genome shotgun

Gene Summary

Adenine Count

1263039 bp

Thymine Count

1273974 bp

Guanine Count

1106917 bp

Cytosine Count

1070021 bp

Genome Length

4713951 bp

Protein-coding Genes

5870 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinJCM19231_53Not AvailablePositive2991754 - 29919035452.69
dna-directed rna polymeraseJCM19231_54Not AvailablePositive2991940 - 299290837011.2
dna-directed rna polymeraseJCM19231_55Not AvailablePositive2992976 - 299431949077.2
dna-directed rna polymeraseJCM19231_56Not AvailablePositive2994334 - 299538939284.3
dna-directed rna polymeraseJCM19231_57Not AvailablePositive2995626 - 299596412536.0
dna-directed rna polymeraseJCM19231_58Not AvailablePositive2996050 - 299711140569.7
dna-directed rna polymeraseJCM19231_59Not AvailablePositive2997162 - 3000242112098.0
regulator of sigma dJCM19231_60Not AvailableNegative3000382 - 300086718369.8
nadh pyrophosphataseJCM19231_61Not AvailablePositive3001047 - 300182329149.0
uroporphyrinogen iii decarboxylaseJCM19231_62Not AvailablePositive3002065 - 300270623913.2

Displaying genes 3801 – 3810 of 5926 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.