Vibrio ishigakensis str. JCM 19231

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio ishigakensis str. JCM 19231 is a bacterial strain characterized by having a single replicon. The strain is cataloged under the accession number BBRZ00000000.1, which indicates its genomic data is available in public databases for further study. This species of Vibrio is known for its role in aquatic ecosystems, where it can be found in marine environments. As a member of the Vibrionaceae family, V. ishigakensis contributes to the microbial diversity in these habitats. The presence of Vibrio species in coastal waters is often linked to various ecological functions, including nutrient cycling and interactions with other marine organisms. Vibrio ishigakensis may play a role in the health of marine ecosystems, potentially influencing the dynamics of microbial communities and the overall ecological balance. The availability of its genomic information allows for deeper insights into its metabolic capabilities and ecological interactions, which may be valuable for understanding its role within marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio ishigakensis
StrainJCM 19231

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio ishigakensis str. JCM 19231
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio ishigakensis DNA, contig00260, whole genome shotgun

Gene Summary

Adenine Count

1263039 bp

Thymine Count

1273974 bp

Guanine Count

1106917 bp

Cytosine Count

1070021 bp

Genome Length

4713951 bp

Protein-coding Genes

5870 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycerophosphoryl diester phosphodiesteraseJCM19231_5475Not AvailableNegative1164121 - 11643909903.64
transporter, putativeJCM19231_5476Not AvailableNegative1164410 - 116582550110.6
ribonuclease e inhibitor rraaJCM19231_5477Not AvailableNegative1166001 - 116650718225.1
1,4-dihydroxy-2-naphthoate octaprenyltransferaseJCM19231_5478Not AvailableNegative1166585 - 116748131631.2
transcriptional regulator, tetr familyJCM19231_5479Not AvailablePositive1167606 - 116825024380.8
phosphatidylserine decarboxylaseJCM19231_5480Not AvailableNegative1168299 - 116916532188.4
ribosome small subunit-stimulated gtpase engcJCM19231_5481Not AvailableNegative1169354 - 117028634485.5
3'-to-5' oligoribonucleaseJCM19231_5482Not AvailablePositive1170378 - 117092320872.9
Trna-glyNot AvailableNot AvailablePositive1171034 - 1171109Not Available
Trna-metNot AvailableNot AvailablePositive1171152 - 1171228Not Available

Displaying genes 1481 – 1490 of 5926 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.