Pseudomonas sp. 250J

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. 250J is characterized by having a single replicon, which is a notable trait among bacterial species, indicating a streamlined genomic organization. Its genomic information is accessible through the accession JHEE00000000.1, providing a basis for further study and potential applications in various fields. As a member of the Pseudomonas genus, this species likely possesses metabolic versatility, enabling it to thrive in diverse environmental conditions. The Pseudomonas genus is well-known for its ability to degrade various organic compounds, which is essential for bioremediation processes. This capability suggests that Pseudomonas sp. 250J may play a role in the breakdown of pollutants, contributing to ecosystem health. Understanding the genetic makeup and traits of Pseudomonas sp. 250J could offer insights into its ecological functions and potential applications in biotechnological fields, particularly in environmental microbiology. The single replicon trait may also imply a simpler regulatory mechanism for gene expression, which could be advantageous in biotechnological applications where rapid adaptation is beneficial. Overall, Pseudomonas sp. 250J exemplifies the diverse roles that bacteria can play in both natural ecosystems and human applications, particularly concerning environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. 250J
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. 250J
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. 250J 250J_219, whole genome shotgun sequence.

Gene Summary

Adenine Count

1036017 bp

Thymine Count

1048927 bp

Guanine Count

1921822 bp

Cytosine Count

1898829 bp

Genome Length

5905595 bp

Protein-coding Genes

5045 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr family transcriptional regulatorDA83_10540Not AvailablePositive5692484 - 569338333591.5
nadp transhydrogenase subunit alphaDA83_10545Q2RSB2Positive5693825 - 569494639030.3
nad(p) transhydrogenaseDA83_10550Q2RSB3Positive5694958 - 569527211159.2
nad synthetaseDA83_10555Q2RSB4Positive5695275 - 569671150084.2
acetyl-coa hydrolaseDA83_10560P38946Positive5696899 - 569839253787.6
diguanylate cyclaseDA83_10565Q9HYT3Negative5698518 - 570018561799.6
atp-dependent dna helicase repDA83_10570Q9L6S1Positive5700442 - 570245176877.1
xanthine phosphoribosyltransferaseDA83_10575Q1I2W1Positive5702515 - 570308720408.8
acetyl-coa hydrolaseDA83_10580P38942Negative5703215 - 570508068897.8
hypothetical proteinDA83_10585Not AvailableNegative5705160 - 57053848588.45

Displaying genes 5011 – 5020 of 5197 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

309 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 309 metabolites

Health Effects

No health effects information available for this bacterium.