Sphingomonas sp. RIT328

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. RIT328 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This species is notable for having a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number JFYV00000000.1, which provides a point of reference for researchers seeking to explore its genetic and functional attributes further. The presence of flagella suggests that Sphingomonas sp. RIT328 is capable of movement, which may play a crucial role in its ecological interactions and survival strategies. Rod-shaped bacteria often exhibit diverse metabolic capabilities, allowing them to thrive in various environments, including soil and aquatic systems. The motility conferred by flagella may enhance its ability to locate nutrient sources or evade unfavorable conditions. In an ecological context, Sphingomonas species are known for their capacity to degrade complex organic compounds, making them important players in bioremediation efforts. This trait, combined with its motility, may enable Sphingomonas sp. RIT328 to colonize diverse habitats effectively, contributing to nutrient cycling and ecosystem health. Thus, understanding the characteristics of Sphingomonas sp. RIT328 may provide valuable insights into its role in environmental processes and its potential applications in biotechnology and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. RIT328
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. RIT328
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. RIT328 contigs9, whole genome shotgun sequence.

Gene Summary

Adenine Count

688119 bp

Thymine Count

688499 bp

Guanine Count

1483463 bp

Cytosine Count

1483430 bp

Genome Length

4343511 bp

Protein-coding Genes

3966 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hlyd secretion family proteinBW41_02690Not AvailableNegative2865525 - 286668539809.5
efflux transporter, outer membrane factor (omf) lipo, nodt family proteinBW41_02691Not AvailableNegative2866682 - 286808547881.3
marr family proteinBW41_02692Not AvailableNegative2868082 - 286855517979.1
degt/dnrj/eryc1/strs aminotransferaseBW41_02693Not AvailablePositive2868749 - 287123286750.6
family 2 glycosyl transferaseBW41_02694Not AvailablePositive2871229 - 287230839505.4
hypothetical proteinBW41_02695Not AvailableNegative2872287 - 287280517838.9
frg domain proteinBW41_02696Not AvailablePositive2873104 - 287381726975.2
thij/pfpi domain-containing proteinBW41_02697Not AvailablePositive2874188 - 287487123785.9
dna topoisomerase 1BW41_02698Not AvailableNegative2874911 - 287751194762.6
hypothetical proteinBW41_02699Not AvailablePositive2877967 - 288020180301.5

Displaying genes 2701 – 2710 of 4061 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.