Sphingomonas sp. RIT328

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas sp. RIT328 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates motility. This species is notable for having a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number JFYV00000000.1, which provides a point of reference for researchers seeking to explore its genetic and functional attributes further. The presence of flagella suggests that Sphingomonas sp. RIT328 is capable of movement, which may play a crucial role in its ecological interactions and survival strategies. Rod-shaped bacteria often exhibit diverse metabolic capabilities, allowing them to thrive in various environments, including soil and aquatic systems. The motility conferred by flagella may enhance its ability to locate nutrient sources or evade unfavorable conditions. In an ecological context, Sphingomonas species are known for their capacity to degrade complex organic compounds, making them important players in bioremediation efforts. This trait, combined with its motility, may enable Sphingomonas sp. RIT328 to colonize diverse habitats effectively, contributing to nutrient cycling and ecosystem health. Thus, understanding the characteristics of Sphingomonas sp. RIT328 may provide valuable insights into its role in environmental processes and its potential applications in biotechnology and bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas sp. RIT328
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas sp. RIT328
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas sp. RIT328 contigs9, whole genome shotgun sequence.

Gene Summary

Adenine Count

688119 bp

Thymine Count

688499 bp

Guanine Count

1483463 bp

Cytosine Count

1483430 bp

Genome Length

4343511 bp

Protein-coding Genes

3966 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bacterial regulatory helix-turn-helix s, arac family proteinBW41_01620Not AvailableNegative1725594 - 172649032055.9
short chain dehydrogenase family proteinBW41_01621Not AvailablePositive1726639 - 172736425602.8
rna 3'-terminal phosphate cyclaseBW41_01622Not AvailableNegative1727595 - 172823923221.4
rna 3'-terminal phosphate cyclaseBW41_01623Not AvailableNegative1728212 - 172861313793.7
rna-splicing ligase rtcbBW41_01624Not AvailableNegative1728649 - 172895110594.8
rna-splicing ligase rtcbBW41_01625Not AvailableNegative1728951 - 17290915078.07
nif-specific regulatory proteinBW41_01626Not AvailablePositive1729099 - 172965020520.2
high-affinity nickel-transporterBW41_01627Not AvailableNegative1729825 - 173086537601.8
hypothetical proteinBW41_01628Not AvailableNegative1730870 - 173128014483.3
cob(ii)yrinic acid a,c-diamide reductaseBW41_01629Not AvailableNegative1731315 - 173195623687.5

Displaying genes 1631 – 1640 of 4061 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.