Spirosoma oryzae str. DSM 28354

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Spirosoma

Description

Spirosoma oryzae str. DSM 28354 is a bacterium characterized by the presence of flagella, which are essential for its motility. This trait allows the organism to navigate its environment effectively, potentially influencing its ecological interactions and habitat preferences. The strain is notable for having a single replicon, which indicates a streamlined genomic organization that could be advantageous for specific metabolic pathways or adaptations. The genomic data for Spirosoma oryzae str. DSM 28354 is cataloged under the accession number PVTE00000000.1, providing a reference for researchers studying its genetic composition and functional capabilities. The presence of flagella not only facilitates movement but may also play a role in biofilm formation and adherence to surfaces, which are critical for survival in various ecological niches. Understanding the motility mechanisms and genetic organization of Spirosoma oryzae str. DSM 28354 can offer insights into its ecological role, particularly in environments where it may compete with other microorganisms or engage in interactions with plant systems. The ability to move towards nutrients or favorable conditions could enhance its survival and proliferation in diverse habitats, reflecting the intricate relationships within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSpirosoma
SpeciesSpirosoma oryzae
StrainDSM 28354

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Spirosoma oryzae strain DSM 28354 Ga0180994_175, whole genome

Gene Summary

Adenine Count

1510969 bp

Thymine Count

1503814 bp

Guanine Count

1776646 bp

Cytosine Count

1778552 bp

Genome Length

6569981 bp

Protein-coding Genes

5670 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphoribosylamine--glycine ligaseCLV58_10241Not AvailableNegative518431 - 51971745811.9
atp-dependent dna helicase recqCLV58_10242Not AvailableNegative519759 - 52196383866.0
arabinose-5-phosphate isomeraseCLV58_10243Not AvailablePositive522112 - 52303833047.0
rna polymerase sigma-70 factor (ecf subfamily)CLV58_10244Not AvailablePositive523431 - 52394619976.8
phytoene desaturaseCLV58_10245Not AvailablePositive524106 - 52557855266.2
phytoene/squalene synthetaseCLV58_10246Not AvailablePositive525618 - 52646332718.4
dha1 family tetracycline resistance protein-like mfs transporterCLV58_10247Not AvailablePositive526530 - 52776244558.5
putative outer membrane starch-binding proteinCLV58_10248Not AvailableNegative528065 - 52970860858.3
tonb-linked susc/raga family outer membrane proteinCLV58_10249Not AvailableNegative529815 - 532919114216.0
aspartyl/glutamyl-trna(asn/gln) amidotransferase subunit bCLV58_10250Not AvailablePositive533143 - 53464855185.7

Displaying genes 481 – 490 of 5714 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.