Spirosoma oryzae str. DSM 28354

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Spirosoma

Description

Spirosoma oryzae str. DSM 28354 is a bacterium characterized by the presence of flagella, which are essential for its motility. This trait allows the organism to navigate its environment effectively, potentially influencing its ecological interactions and habitat preferences. The strain is notable for having a single replicon, which indicates a streamlined genomic organization that could be advantageous for specific metabolic pathways or adaptations. The genomic data for Spirosoma oryzae str. DSM 28354 is cataloged under the accession number PVTE00000000.1, providing a reference for researchers studying its genetic composition and functional capabilities. The presence of flagella not only facilitates movement but may also play a role in biofilm formation and adherence to surfaces, which are critical for survival in various ecological niches. Understanding the motility mechanisms and genetic organization of Spirosoma oryzae str. DSM 28354 can offer insights into its ecological role, particularly in environments where it may compete with other microorganisms or engage in interactions with plant systems. The ability to move towards nutrients or favorable conditions could enhance its survival and proliferation in diverse habitats, reflecting the intricate relationships within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSpirosoma
SpeciesSpirosoma oryzae
StrainDSM 28354

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Spirosoma oryzae strain DSM 28354 Ga0180994_175, whole genome

Gene Summary

Adenine Count

1510969 bp

Thymine Count

1503814 bp

Guanine Count

1776646 bp

Cytosine Count

1778552 bp

Genome Length

6569981 bp

Protein-coding Genes

5670 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cobalt-zinc-cadmium efflux system membrane fusion proteinCLV58_113144Not AvailableNegative3904548 - 390563039630.9
cobalt-zinc-cadmium efflux system outer membrane proteinCLV58_113145Not AvailableNegative3905719 - 390704750080.3
cobalt-zinc-cadmium resistance protein czcaCLV58_113146Not AvailablePositive3907414 - 3910596115086.0
outer membrane protein tolcCLV58_113147Not AvailablePositive3910593 - 391180445996.1
rnd family efflux transporter mfp subunitCLV58_113148Not AvailablePositive3911887 - 391311044345.0
cation diffusion facilitator family transporterCLV58_113149Not AvailableNegative3913185 - 391418937329.2
8-oxo-dgtp pyrophosphatase mutt (nudix family)CLV58_113150Not AvailablePositive3914242 - 391479020413.9
threonine/homoserine/homoserine lactone efflux proteinCLV58_113151Not AvailablePositive3914895 - 391553023222.8
copper chaperone copzCLV58_113152Not AvailableNegative3915719 - 39159438201.69
uncharacterized protein duf563CLV58_113153Not AvailableNegative3916060 - 391721443786.3

Displaying genes 3341 – 3350 of 5714 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.