Spirosoma oryzae str. DSM 28354

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cytophagaceae

Genus

Spirosoma

Description

Spirosoma oryzae str. DSM 28354 is a bacterium characterized by the presence of flagella, which are essential for its motility. This trait allows the organism to navigate its environment effectively, potentially influencing its ecological interactions and habitat preferences. The strain is notable for having a single replicon, which indicates a streamlined genomic organization that could be advantageous for specific metabolic pathways or adaptations. The genomic data for Spirosoma oryzae str. DSM 28354 is cataloged under the accession number PVTE00000000.1, providing a reference for researchers studying its genetic composition and functional capabilities. The presence of flagella not only facilitates movement but may also play a role in biofilm formation and adherence to surfaces, which are critical for survival in various ecological niches. Understanding the motility mechanisms and genetic organization of Spirosoma oryzae str. DSM 28354 can offer insights into its ecological role, particularly in environments where it may compete with other microorganisms or engage in interactions with plant systems. The ability to move towards nutrients or favorable conditions could enhance its survival and proliferation in diverse habitats, reflecting the intricate relationships within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCytophagaceae
GenusSpirosoma
SpeciesSpirosoma oryzae
StrainDSM 28354

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Spirosoma oryzae strain DSM 28354 Ga0180994_175, whole genome

Gene Summary

Adenine Count

1510969 bp

Thymine Count

1503814 bp

Guanine Count

1776646 bp

Cytosine Count

1778552 bp

Genome Length

6569981 bp

Protein-coding Genes

5670 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tonb-linked susc/raga family outer membrane proteinCLV58_108196Not AvailablePositive2843556 - 2846852118681.0
putative outer membrane starch-binding proteinCLV58_108197Not AvailablePositive2846929 - 284867162996.1
hypothetical proteinCLV58_108198Not AvailablePositive2848791 - 28489706546.3
hypothetical proteinCLV58_108199Not AvailableNegative2849093 - 28493057159.42
rna polymerase sigma factor (sigma-70 family)CLV58_108200Not AvailablePositive2849435 - 285001322543.8
trypsin-like peptidaseCLV58_108201Not AvailablePositive2850019 - 285104137506.3
hypothetical proteinCLV58_108202Not AvailablePositive2851105 - 285145212131.5
molybdopterin synthase sulfur carrier subunitCLV58_108203Not AvailablePositive2851577 - 28518258655.39
molybdopterin synthase subunit moaeCLV58_108204Not AvailablePositive2851868 - 285227815421.5
endonuclease/exonuclease/phosphatase family metal-dependent hydrolaseCLV58_108205Not AvailableNegative2852292 - 285341042855.0

Displaying genes 2371 – 2380 of 5714 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.