Pantoea coffeiphila str. 342

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea coffeiphila str. 342 is characterized by the presence of flagella, which are crucial for its motility and may influence its ecological interactions. This bacterium has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The accession number for its genomic data is PDET00000000.1, which provides a reference for researchers interested in studying its genetic makeup. The presence of flagella suggests that Pantoea coffeiphila str. 342 can actively navigate its environment, which may include interactions with plant hosts or other microorganisms. This motility can enhance its ability to colonize various niches, particularly in agricultural settings where it may be associated with crops such as coffee. Understanding motility in this context is important, as it can influence both pathogenicity and beneficial interactions with plants. Given its genomic simplicity and motility features, Pantoea coffeiphila str. 342 may play a significant role in its ecosystem, potentially affecting soil health and plant growth. The bacterium's interactions with plants could be further explored to uncover its potential benefits in agriculture, such as promoting growth or protecting against pathogens. Overall, Pantoea coffeiphila str. 342 exemplifies the complex dynamics of microbial life and its implications for agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea coffeiphila
Strain342

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pantoea coffeiphila strain 342 NODE_93_length_503_cov_1.30851,

Gene Summary

Adenine Count

1313392 bp

Thymine Count

1321054 bp

Guanine Count

1622708 bp

Cytosine Count

1619170 bp

Genome Length

5876876 bp

Protein-coding Genes

5081 genes

Non-Coding Genes

313 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphatase pap2 family proteinCQW29_24840Not AvailablePositive5419343 - 542007727042.0
ferrichrome porin fhuaCQW29_24845Not AvailablePositive5420326 - 542252781420.2
iron-hydroxamate transporter atp-binding subunitCQW29_24850Not AvailablePositive5422576 - 542337028767.0
iron-hydroxamate transporter substrate-binding subunitCQW29_24855Not AvailablePositive5423380 - 542426132676.9
fe(3+)-hydroxamate abc transporter permease fhubCQW29_24860Not AvailablePositive5424261 - 542623769616.4
glutamate-1-semialdehyde-2,1-aminomutaseCQW29_24865Not AvailableNegative5426360 - 542764045504.7
iron-sulfur cluster insertion protein erpaCQW29_24870Not AvailablePositive5427916 - 542826012071.2
hypothetical proteinCQW29_24875Not AvailableNegative5428342 - 542865911310.8
vitamin b12 abc transporter substrate-binding protein btufCQW29_24880Not AvailableNegative5428740 - 542953429316.4
5'-methylthioadenosine/s-adenosylhomocysteine nucleosidaseCQW29_24885Not AvailableNegative5429527 - 543022524273.2

Displaying genes 4991 – 5000 of 5394 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.