Pantoea coffeiphila str. 342

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea coffeiphila str. 342 is characterized by the presence of flagella, which are crucial for its motility and may influence its ecological interactions. This bacterium has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The accession number for its genomic data is PDET00000000.1, which provides a reference for researchers interested in studying its genetic makeup. The presence of flagella suggests that Pantoea coffeiphila str. 342 can actively navigate its environment, which may include interactions with plant hosts or other microorganisms. This motility can enhance its ability to colonize various niches, particularly in agricultural settings where it may be associated with crops such as coffee. Understanding motility in this context is important, as it can influence both pathogenicity and beneficial interactions with plants. Given its genomic simplicity and motility features, Pantoea coffeiphila str. 342 may play a significant role in its ecosystem, potentially affecting soil health and plant growth. The bacterium's interactions with plants could be further explored to uncover its potential benefits in agriculture, such as promoting growth or protecting against pathogens. Overall, Pantoea coffeiphila str. 342 exemplifies the complex dynamics of microbial life and its implications for agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea coffeiphila
Strain342

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pantoea coffeiphila strain 342 NODE_93_length_503_cov_1.30851,

Gene Summary

Adenine Count

1313392 bp

Thymine Count

1321054 bp

Guanine Count

1622708 bp

Cytosine Count

1619170 bp

Genome Length

5876876 bp

Protein-coding Genes

5081 genes

Non-Coding Genes

313 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-hydroxy-3-polyprenylbenzoate decarboxylaseCQW29_23580Not AvailablePositive5142724 - 514420855768.0
nad(p)h-flavin reductaseCQW29_23585Not AvailablePositive5144254 - 514495526296.7
acetyl-coa c-acyltransferase fadaCQW29_23590Not AvailableNegative5145053 - 514621641050.6
fatty acid oxidation complex subunit alpha fadbCQW29_23595Not AvailableNegative5146227 - 514841378640.5
xaa-pro dipeptidaseCQW29_23600Not AvailablePositive5148600 - 514993150273.0
yigz family proteinCQW29_23605Not AvailablePositive5149931 - 515054222215.9
trk system potassium transporter trkhCQW29_23610Not AvailablePositive5150570 - 515202153035.2
menaquinone-dependent protoporphyrinogen ix dehydrogenaseCQW29_23615Not AvailablePositive5152036 - 515256920578.7
is3 family transposaseCQW29_23620Not AvailablePositive5152939 - 51531538171.8
aconitate hydratase acnaCQW29_23625Not AvailableNegative5153193 - 515587797971.8

Displaying genes 4741 – 4750 of 5394 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.