Pantoea coffeiphila str. 342

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Pantoea

Description

Pantoea coffeiphila str. 342 is characterized by the presence of flagella, which are crucial for its motility and may influence its ecological interactions. This bacterium has a single replicon, indicating a streamlined genomic structure that may facilitate efficient replication and adaptation. The accession number for its genomic data is PDET00000000.1, which provides a reference for researchers interested in studying its genetic makeup. The presence of flagella suggests that Pantoea coffeiphila str. 342 can actively navigate its environment, which may include interactions with plant hosts or other microorganisms. This motility can enhance its ability to colonize various niches, particularly in agricultural settings where it may be associated with crops such as coffee. Understanding motility in this context is important, as it can influence both pathogenicity and beneficial interactions with plants. Given its genomic simplicity and motility features, Pantoea coffeiphila str. 342 may play a significant role in its ecosystem, potentially affecting soil health and plant growth. The bacterium's interactions with plants could be further explored to uncover its potential benefits in agriculture, such as promoting growth or protecting against pathogens. Overall, Pantoea coffeiphila str. 342 exemplifies the complex dynamics of microbial life and its implications for agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusPantoea
SpeciesPantoea coffeiphila
Strain342

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pantoea coffeiphila strain 342 NODE_93_length_503_cov_1.30851,

Gene Summary

Adenine Count

1313392 bp

Thymine Count

1321054 bp

Guanine Count

1622708 bp

Cytosine Count

1619170 bp

Genome Length

5876876 bp

Protein-coding Genes

5081 genes

Non-Coding Genes

313 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dtdp-4-dehydrorhamnose reductaseCQW29_03820Not AvailablePositive808826 - 80968030849.8
hydroxyethylthiazole kinaseCQW29_03825Not AvailablePositive810093 - 81088427007.4
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseCQW29_03830Not AvailablePositive810881 - 81168128711.4
fructose-bisphosphate aldolaseCQW29_03835Not AvailablePositive811859 - 81291138086.4
hypothetical proteinCQW29_03840Not AvailableNegative813010 - 81363323655.9
gntr family transcriptional regulatorCQW29_03845Not AvailableNegative813917 - 81460325632.7
fructuronate reductaseCQW29_03850Not AvailableNegative814735 - 81620154311.9
mfs transporterCQW29_03855Not AvailableNegative816248 - 81753146320.2
zn-dependent oxidoreductaseCQW29_03860Not AvailableNegative817628 - 81863836207.8
bifunctional d-altronate/d-mannonate dehydrataseCQW29_03865Not AvailableNegative818649 - 81986345733.6

Displaying genes 1031 – 1040 of 5394 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.