Paraburkholderia ginsengiterrae str. DCY85

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia ginsengiterrae str. DCY85 is a rod-shaped bacterium notable for its motility, as evidenced by the presence of flagella. This characteristic suggests that P. ginsengiterrae can navigate its environment, which may be advantageous for its survival and ecological interactions. The strain has a single replicon, indicating a streamlined genomic organization that could influence its growth and replication dynamics. The genomic information for P. ginsengiterrae str. DCY85 is cataloged under the accession number LXKA00000000.1. This accession provides a reference point for researchers interested in studying the genetic makeup and functional capabilities of this organism. The genetic data could facilitate investigations into its metabolic pathways, ecological roles, and potential applications in biotechnology. Understanding the traits of Paraburkholderia ginsengiterrae str. DCY85 is crucial for appreciating its ecological niche, particularly in the context of its interactions with plant systems or in bioremediation scenarios. The combination of its rod shape and motility may enhance its ability to colonize different environments, potentially leading to symbiotic relationships with plants or involvement in nutrient cycling. This highlights the importance of studying such microorganisms, as they may play significant roles in their ecosystems, contributing to plant health or environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia ginsengiterrae
StrainDCY85

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia ginsengiterrae strain DCY85 NODE_9, whole genome

Gene Summary

Adenine Count

1602874 bp

Thymine Count

1597311 bp

Guanine Count

2662674 bp

Cytosine Count

2670182 bp

Genome Length

8533041 bp

Protein-coding Genes

7326 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cysteine hydrolaseA6V37_11115Not AvailableNegative8235580 - 823623623533.0
hypothetical proteinA6V37_11120Not AvailablePositive8236443 - 823721028162.1
histidine kinaseA6V37_11130O23193Negative8237570 - 823826225484.9
phosphate abc transporter substrate-binding protein pstsA6V37_11135Q9PBK3Negative8238295 - 823940138641.1
dna-binding response regulatorA6V37_11140Q51373Negative8239648 - 824024121610.2
histidine kinaseA6V37_11145Not AvailableNegative8240309 - 824197958831.8
farnesyl-diphosphate farnesyltransferaseA6V37_11150Q9SDW9Positive8242405 - 824345138789.6
hypothetical proteinA6V37_11155Not AvailablePositive8243592 - 82438408636.57
hypothetical proteinA6V37_11160Not AvailableNegative8244068 - 824438510826.7
x-pro dipeptidaseA6V37_11165P65811Positive8244885 - 824609944470.0

Displaying genes 7131 – 7140 of 7391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

448 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da

Displaying 1–10 of 448 metabolites

Health Effects

No health effects information available for this bacterium.