Paraburkholderia ginsengiterrae str. DCY85

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia ginsengiterrae str. DCY85 is a rod-shaped bacterium notable for its motility, as evidenced by the presence of flagella. This characteristic suggests that P. ginsengiterrae can navigate its environment, which may be advantageous for its survival and ecological interactions. The strain has a single replicon, indicating a streamlined genomic organization that could influence its growth and replication dynamics. The genomic information for P. ginsengiterrae str. DCY85 is cataloged under the accession number LXKA00000000.1. This accession provides a reference point for researchers interested in studying the genetic makeup and functional capabilities of this organism. The genetic data could facilitate investigations into its metabolic pathways, ecological roles, and potential applications in biotechnology. Understanding the traits of Paraburkholderia ginsengiterrae str. DCY85 is crucial for appreciating its ecological niche, particularly in the context of its interactions with plant systems or in bioremediation scenarios. The combination of its rod shape and motility may enhance its ability to colonize different environments, potentially leading to symbiotic relationships with plants or involvement in nutrient cycling. This highlights the importance of studying such microorganisms, as they may play significant roles in their ecosystems, contributing to plant health or environmental sustainability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia ginsengiterrae
StrainDCY85

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia ginsengiterrae strain DCY85 NODE_9, whole genome

Gene Summary

Adenine Count

1602874 bp

Thymine Count

1597311 bp

Guanine Count

2662674 bp

Cytosine Count

2670182 bp

Genome Length

8533041 bp

Protein-coding Genes

7326 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinA6V37_06890Not AvailableNegative6632448 - 66327029479.2
transposaseA6V37_06895Not AvailableNegative6632993 - 663339414973.9
lysr family transcriptional regulatorA6V37_06900Not AvailablePositive6633801 - 663470332726.5
aspartate aminotransferaseA6V37_06905O58489Positive6634829 - 663606444200.9
smc-scp complex subunit scpbA6V37_06910Q83CP9Positive6636432 - 663739434048.2
23s rrna pseudouridylate synthase bA6V37_06915Q9HZ55Positive6637459 - 663933065257.8
hypothetical proteinA6V37_06920Not AvailableNegative6639359 - 66396139630.59
ribosome maturation factor rimpA6V37_06925Q140U8Positive6639772 - 664023017118.8
transcription termination/antitermination protein nusaA6V37_06930Q83BS0Positive6640227 - 664170255218.8
translation initiation factor if-2A6V37_06935B2T381Positive6641796 - 6644747105365.0

Displaying genes 5781 – 5790 of 7391 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

448 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da

Displaying 1–10 of 448 metabolites

Health Effects

No health effects information available for this bacterium.