Geomicrobium sp. JCM 19055

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Genus

Geomicrobium

Description

Geomicrobium sp. JCM 19055 is a bacterial strain characterized by a single replicon, which is significant as it can indicate a streamlined genomic structure. This strain is cataloged under the accession number BAXL00000000.1, which provides a reference point for researchers interested in studying its genetic information. This organism is part of the Geomicrobium genus, which typically includes bacteria known for their roles in biogeochemical processes in various environments. While specific ecological roles of Geomicrobium sp. JCM 19055 are not detailed in the provided information, members of this genus are often associated with the cycling of nutrients and involvement in the mineralization of organic matter. The single replicon trait suggests that Geomicrobium sp. JCM 19055 may possess a relatively simple genetic makeup, potentially allowing for efficient replication and adaptation in its environment. This could be crucial for its survival in various ecological niches, particularly in environments where resource availability fluctuates. Overall, the traits of Geomicrobium sp. JCM 19055 point towards its potential importance in microbial communities, especially in processes related to nutrient cycling and ecological balance. Understanding the characteristics of this strain may further enhance our knowledge of the functional roles bacteria play in their ecosystems.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geomicrobium sp. JCM 19055 DNA, contig: JCM19055.contig00048,

Gene Summary

Adenine Count

1209098 bp

Thymine Count

1186525 bp

Guanine Count

881688 bp

Cytosine Count

819543 bp

Genome Length

4096854 bp

Protein-coding Genes

4616 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap-type c4-dicarboxylate transport system, periplasmic componentJCM19055_4456Not AvailablePositive3638261 - 363866515521.5
trap-type c4-dicarboxylate transport system, periplasmic componentJCM19055_4457Not AvailablePositive3638713 - 36389709747.26
trap-type transport system, small permease component, predicted n-acetylneuraminate transporterJCM19055_4458Not AvailablePositive3638982 - 363947318735.4
trap-type c4-dicarboxylate transport system, large permease componentJCM19055_4459Not AvailablePositive3639470 - 364074645378.2
6-phospho-3-hexuloisomeraseJCM19055_4460Not AvailablePositive3640761 - 364130619820.6
2-dehydro-3-deoxygluconate kinaseJCM19055_4461Not AvailablePositive3641317 - 364226734285.1
d-arabino-3-hexulose 6-phosphate formaldehyde lyaseJCM19055_4462Not AvailablePositive3642280 - 364290022362.1
hypothetical proteinJCM19055_4463Not AvailableNegative3643015 - 364368624988.1
transporterJCM19055_4464Not AvailableNegative3643673 - 36439219349.73
hypothetical proteinJCM19055_4465Not AvailablePositive3644204 - 364467716821.4

Displaying genes 4211 – 4220 of 4710 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.