Geomicrobium sp. JCM 19055

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Genus

Geomicrobium

Description

Geomicrobium sp. JCM 19055 is a bacterial strain characterized by a single replicon, which is significant as it can indicate a streamlined genomic structure. This strain is cataloged under the accession number BAXL00000000.1, which provides a reference point for researchers interested in studying its genetic information. This organism is part of the Geomicrobium genus, which typically includes bacteria known for their roles in biogeochemical processes in various environments. While specific ecological roles of Geomicrobium sp. JCM 19055 are not detailed in the provided information, members of this genus are often associated with the cycling of nutrients and involvement in the mineralization of organic matter. The single replicon trait suggests that Geomicrobium sp. JCM 19055 may possess a relatively simple genetic makeup, potentially allowing for efficient replication and adaptation in its environment. This could be crucial for its survival in various ecological niches, particularly in environments where resource availability fluctuates. Overall, the traits of Geomicrobium sp. JCM 19055 point towards its potential importance in microbial communities, especially in processes related to nutrient cycling and ecological balance. Understanding the characteristics of this strain may further enhance our knowledge of the functional roles bacteria play in their ecosystems.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geomicrobium sp. JCM 19055 DNA, contig: JCM19055.contig00048,

Gene Summary

Adenine Count

1209098 bp

Thymine Count

1186525 bp

Guanine Count

881688 bp

Cytosine Count

819543 bp

Genome Length

4096854 bp

Protein-coding Genes

4616 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulator, gntr familyJCM19055_4342Not AvailablePositive3548370 - 354901424688.5
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylaseJCM19055_4343Not AvailablePositive3548995 - 354983230939.1
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylaseJCM19055_4344Not AvailablePositive3549829 - 355058127760.2
5-carboxymethyl-2-hydroxymuconate delta-isomeraseJCM19055_4345Not AvailablePositive3550589 - 355098114897.8
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenaseJCM19055_4346Not AvailablePositive3551204 - 355273656967.5
4-hydroxyphenylacetate 3-monooxygenaseJCM19055_4347Not AvailablePositive3552742 - 355421155461.9
3,4-dihydroxyphenylacetate 2,3-dioxygenaseJCM19055_4348Not AvailablePositive3554226 - 35544207358.8
3,4-dihydroxyphenylacetate 2,3-dioxygenaseJCM19055_4349Not AvailablePositive3554413 - 355521030776.3
nitrilotriacetate monooxygenase component bJCM19055_4350Not AvailablePositive3555248 - 355572017471.8
hypothetical proteinJCM19055_4351Not AvailablePositive3555829 - 355612211384.4

Displaying genes 4101 – 4110 of 4710 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.