Vibrio sp. JCM 19053

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. JCM 19053 is characterized by a single replicon, indicating a streamlined genomic structure. The genomic data for this organism is available under the accession number BAXK00000000.1. As a member of the Vibrio genus, it is important to consider that species within this group are often associated with aquatic environments, where they play significant roles in nutrient cycling and can be involved in the degradation of organic matter. This trait suggests that Vibrio sp. JCM 19053 may contribute to ecological processes in its habitat, potentially impacting water quality and the health of aquatic ecosystems. In summary, Vibrio sp. JCM 19053, with its single replicon and documented genomic sequence, exemplifies the traits typical of the Vibrio genus, which is crucial for understanding its ecological role and potential applications in microbiology and environmental science.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. JCM 19053
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. JCM 19053
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. JCM 19053 DNA, contig: JCM19053.contig00106, whole

Gene Summary

Adenine Count

1433332 bp

Thymine Count

1439478 bp

Guanine Count

1164581 bp

Cytosine Count

1131291 bp

Genome Length

5168682 bp

Protein-coding Genes

4752 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lsu rrna 2'-o-methyl-c2498 methyltransferase rlmmJCM19053_248Not AvailablePositive3947619 - 394876844135.6
exodeoxyribonuclease ixJCM19053_249Not AvailableNegative3948877 - 394966029245.9
decarboxylase family proteinJCM19053_250Not AvailableNegative3949719 - 395109651362.9
ggdef domain proteinJCM19053_251Not AvailableNegative3951398 - 395295659990.6
hypothetical proteinJCM19053_252Not AvailableNegative3953120 - 395533985563.1
nadph-dependent 7-cyano-7-deazaguanine reductaseJCM19053_253Not AvailableNegative3955503 - 395634732236.9
syd proteinJCM19053_254Not AvailablePositive3956456 - 395700120453.2
zn-ribbon-containing, possibly nucleic-acid-binding proteinJCM19053_255Not AvailablePositive3957004 - 395778029791.5
methionine abc transporter substrate-binding proteinJCM19053_256Not AvailableNegative3957906 - 395871429026.6
methionine abc transporter permease proteinJCM19053_257Not AvailableNegative3958747 - 395942423533.8

Displaying genes 3711 – 3720 of 4861 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.