Vibrio sp. JCM 19053

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio sp. JCM 19053 is characterized by a single replicon, indicating a streamlined genomic structure. The genomic data for this organism is available under the accession number BAXK00000000.1. As a member of the Vibrio genus, it is important to consider that species within this group are often associated with aquatic environments, where they play significant roles in nutrient cycling and can be involved in the degradation of organic matter. This trait suggests that Vibrio sp. JCM 19053 may contribute to ecological processes in its habitat, potentially impacting water quality and the health of aquatic ecosystems. In summary, Vibrio sp. JCM 19053, with its single replicon and documented genomic sequence, exemplifies the traits typical of the Vibrio genus, which is crucial for understanding its ecological role and potential applications in microbiology and environmental science.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sp. JCM 19053
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sp. JCM 19053
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. JCM 19053 DNA, contig: JCM19053.contig00106, whole

Gene Summary

Adenine Count

1433332 bp

Thymine Count

1439478 bp

Guanine Count

1164581 bp

Cytosine Count

1131291 bp

Genome Length

5168682 bp

Protein-coding Genes

4752 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trk system potassium uptake protein trkaJCM19053_498Not AvailableNegative2723350 - 272472750114.2
16s rrna (cytosine(967)-c(5))-methyltransferaseJCM19053_499Not AvailableNegative2724791 - 272607447932.5
methionyl-trna formyltransferaseJCM19053_500Not AvailableNegative2726155 - 272710233951.6
peptide deformylaseJCM19053_501Not AvailableNegative2727136 - 272755215613.8
hypothetical proteinJCM19053_502Not AvailablePositive2727794 - 272888840341.2
rossmann fold nucleotide-binding protein smfJCM19053_503Not AvailablePositive2728872 - 272998140018.1
hypothetical proteinJCM19053_504Not AvailablePositive2729984 - 273046218553.4
c-terminal zn-finger domain of dna topoisomerase iJCM19053_505Not AvailablePositive2730539 - 273110820925.0
phosphoribosylaminoimidazole carboxylase atpase subunitJCM19053_506Not AvailableNegative2731175 - 273230740868.9
phosphoribosylaminoimidazole carboxylase catalytic subunitJCM19053_507Not AvailableNegative2732312 - 273279716606.3

Displaying genes 2561 – 2570 of 4861 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.