Geomicrobium sp. JCM 19039

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Genus

Geomicrobium

Description

Geomicrobium sp. JCM 19039 is a unique microbial organism characterized by its singular replicon, indicating a streamlined genetic structure that may contribute to its adaptability and ecological niche. The strain is cataloged under accession number BAXB00000000.1, which serves as a reference for genetic and taxonomic studies. Given its classification within the genus Geomicrobium, this organism is likely to be involved in biogeochemical processes in its natural environment. Members of the Geomicrobium genus are known for their roles in the cycling of various elements, which can have implications for nutrient availability and ecosystem health. The simplification of having a single replicon suggests a potential efficiency in replication and resource utilization, traits that can be advantageous in competitive environments. In summary, Geomicrobium sp. JCM 19039, with its single replicon and established genetic reference, represents a distinct entity within its genus. Its ecological role is likely tied to microbial processes that influence ecosystem dynamics, particularly in environments where such microorganisms play a crucial part in biogeochemical cycles. Understanding this strain could enhance our knowledge of microbial ecology and the functional contributions of Geomicrobium species in various habitats.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geomicrobium sp. JCM 19039 DNA, contig: JCM19039.contig00057,

Gene Summary

Adenine Count

1186682 bp

Thymine Count

1140236 bp

Guanine Count

971504 bp

Cytosine Count

871945 bp

Genome Length

4170367 bp

Protein-coding Genes

4283 genes

Non-Coding Genes

133 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding response regulator, arac familyJCM19039_2167Not AvailablePositive1942585 - 194369142556.2
ferric iron abc transporter, iron-binding proteinJCM19039_2168Not AvailablePositive1943836 - 194488238035.3
putrescine transport atp-binding protein potaJCM19039_2169Not AvailablePositive1944948 - 194604841060.0
ferric iron abc transporter, permease proteinJCM19039_2170Not AvailablePositive1946035 - 194769161320.6
glycerol-3-phosphate abc transporter, periplasmic glycerol-3-phosphate-binding proteinJCM19039_2171Not AvailablePositive1947728 - 194889444696.2
mutt/nudix family proteinJCM19039_2172Not AvailablePositive1948896 - 194952223660.0
hypothetical proteinJCM19039_2173Not AvailablePositive1949544 - 195038031659.5
5-carboxymethyl-2-hydroxymuconate delta-isomeraseJCM19039_2174Not AvailableNegative1950590 - 195097914920.8
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylaseJCM19039_2175Not AvailableNegative1950979 - 195172227646.0
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylaseJCM19039_2176Not AvailableNegative1951780 - 195246925873.7

Displaying genes 2031 – 2040 of 4416 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.