Geomicrobium sp. JCM 19038

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Genus

Geomicrobium

Description

Geomicrobium sp. JCM 19038 is a notable bacterium characterized by a single replicon, indicating a streamlined genomic organization. Its genomic data can be accessed through the accession number BAXA00000000.1. This organism is part of the genus Geomicrobium, which is known for its potential roles in biogeochemical cycling and interactions with the environment. The presence of only one replicon suggests that Geomicrobium sp. JCM 19038 may possess a simpler genetic framework compared to other bacteria that have multiple replicons. This can imply a more efficient replication process, which may contribute to its adaptability and survival in various ecological niches. The ecological significance of Geomicrobium species often revolves around their involvement in mineral transformations and nutrient cycling, particularly in marine and sedimentary environments. In summary, Geomicrobium sp. JCM 19038, with its single replicon and specific genomic information, represents an interesting subject for further study in microbial ecology. Understanding its genetic traits could provide insights into its ecological roles, particularly in biogeochemical processes, and enhance our knowledge of microbial diversity and function in various environments.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geomicrobium sp. JCM 19038


Gene Summary

Adenine Count

1158452 bp

Thymine Count

1096318 bp

Guanine Count

869156 bp

Cytosine Count

748694 bp

Genome Length

3872620 bp

Protein-coding Genes

4017 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap-type c4-dicarboxylate transport system, periplasmic componentJCM19038_3991Not AvailablePositive3608191 - 360920137365.4
trap-type transport system, small permease component, predicted n-acetylneuraminate transporterJCM19038_3992Not AvailablePositive3609213 - 360970418721.4
trap-type c4-dicarboxylate transport system, large permease componentJCM19038_3993Not AvailablePositive3609701 - 361097845204.9
6-phospho-3-hexuloisomeraseJCM19038_3994Not AvailablePositive3610993 - 361153819902.7
2-dehydro-3-deoxygluconate kinaseJCM19038_3995Not AvailablePositive3611549 - 361249934382.1
d-arabino-3-hexulose 6-phosphate formaldehyde lyaseJCM19038_3996Not AvailablePositive3612512 - 361313222386.2
hypothetical proteinJCM19038_3997Not AvailableNegative3613247 - 361415233801.2
hypothetical proteinJCM19038_3998Not AvailablePositive3614432 - 361485714889.0
golgi phosphoprotein 3JCM19038_3999Not AvailableNegative3614901 - 361559026062.8
low-specificity d-threonine aldolaseJCM19038_4000Not AvailablePositive3615760 - 361684839628.6

Displaying genes 3841 – 3850 of 4141 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.