Geomicrobium sp. JCM 19038

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Genus

Geomicrobium

Description

Geomicrobium sp. JCM 19038 is a notable bacterium characterized by a single replicon, indicating a streamlined genomic organization. Its genomic data can be accessed through the accession number BAXA00000000.1. This organism is part of the genus Geomicrobium, which is known for its potential roles in biogeochemical cycling and interactions with the environment. The presence of only one replicon suggests that Geomicrobium sp. JCM 19038 may possess a simpler genetic framework compared to other bacteria that have multiple replicons. This can imply a more efficient replication process, which may contribute to its adaptability and survival in various ecological niches. The ecological significance of Geomicrobium species often revolves around their involvement in mineral transformations and nutrient cycling, particularly in marine and sedimentary environments. In summary, Geomicrobium sp. JCM 19038, with its single replicon and specific genomic information, represents an interesting subject for further study in microbial ecology. Understanding its genetic traits could provide insights into its ecological roles, particularly in biogeochemical processes, and enhance our knowledge of microbial diversity and function in various environments.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Geomicrobium sp. JCM 19038 DNA, contig: JCM19038.contig00037,

Gene Summary

Adenine Count

1158452 bp

Thymine Count

1096318 bp

Guanine Count

869156 bp

Cytosine Count

748694 bp

Genome Length

3872620 bp

Protein-coding Genes

4017 genes

Non-Coding Genes

124 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
metal-dependent hydrolaseJCM19038_1065Not AvailablePositive993767 - 99428819224.2
uv dna damage endonucleaseJCM19038_1066Not AvailableNegative994280 - 99523637011.0
substrate-specific component ribu of riboflavin ecf transporterJCM19038_1067Not AvailablePositive995786 - 99631919176.6
trap-type c4-dicarboxylate transport system, large permease componentJCM19038_1068Not AvailableNegative996360 - 99763744679.2
trap-type transport system, small permease component, predicted n-acetylneuraminate transporterJCM19038_1069Not AvailableNegative997638 - 99814719175.3
trap-type c4-dicarboxylate transport system, periplasmic componentJCM19038_1070Not AvailableNegative998176 - 99865818360.9
trap-type transport system, periplasmic component, predicted n-acetylneuraminate-binding proteinJCM19038_1071Not AvailableNegative998661 - 99916418315.3
dna-binding response regulatorJCM19038_1072Not AvailablePositive999471 - 100014225350.2
hypothetical proteinJCM19038_1073Not AvailablePositive1000143 - 100061918142.8
sensor histidine kinaseJCM19038_1074Not AvailablePositive1000628 - 100151233666.6

Displaying genes 1131 – 1140 of 4141 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.