Helicobacter valdiviensis str. WBE14

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter valdiviensis str. WBE14 is a bacterium characterized by a single replicon. It has been cataloged under the accession number NBIU00000000.1, which allows for its identification and further study within genomic databases. As a member of the Helicobacter genus, H. valdiviensis is likely to share some phenotypic and ecological characteristics with other species in this group, known for their association with the gastrointestinal tracts of various hosts. While specific ecological niches or interactions of H. valdiviensis str. WBE14 have not been detailed in the provided information, Helicobacter species are often associated with both commensal and pathogenic relationships in their environments. The existence of a single replicon suggests a streamlined genomic architecture, which may have implications for its adaptability and survival in its specific ecological niche. This trait may contribute to the bacterium's evolutionary strategies, potentially influencing its ecological role and interactions within microbial communities. In summary, H. valdiviensis str. WBE14 is defined by its single replicon and accession number NBIU00000000.1, placing it within the broader context of Helicobacter species, which are significant in the gastrointestinal microbiome. Understanding its genomic framework could provide insights into its ecological dynamics and potential roles in its environment.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter valdiviensis
StrainWBE14

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Helicobacter valdiviensis str. WBE14
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter valdiviensis strain WBE14 contig140, whole genome

Gene Summary

Adenine Count

750444 bp

Thymine Count

737747 bp

Guanine Count

363015 bp

Cytosine Count

330085 bp

Genome Length

2181291 bp

Protein-coding Genes

2065 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
7-cyano-7-deazaguanine synthase quecB6S12_08465Not AvailableNegative1709911 - 171060025631.1
bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/gtp cyclohydrolase iiB6S12_08470Not AvailableNegative1710610 - 171164438839.5
Trna-glnNot AvailableNot AvailablePositive1711780 - 1711854Not Available
Trna-metNot AvailableNot AvailablePositive1711925 - 1712001Not Available
chemotaxis proteinB6S12_08485Not AvailablePositive1712324 - 171341540529.0
ligand-binding protein sh3B6S12_08490Not AvailableNegative1713423 - 171374311823.0
qace family quaternary ammonium compound efflux smr transporterB6S12_08495Not AvailableNegative1713736 - 171408012665.0
3-dehydroquinate synthaseB6S12_08500Not AvailablePositive1714231 - 171525638366.7
hypothetical proteinB6S12_08505Not AvailablePositive1715253 - 171691163557.5
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabB6S12_08510Not AvailablePositive1716921 - 171820148644.1

Displaying genes 1681 – 1690 of 2117 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.